sisl.Atoms
==========















.. currentmodule:: sisl

.. autoclass:: Atoms







   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         


   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         



















   .. rubric:: Methods

   .. autosummary::
      





   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.add

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.append

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.copy

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.equal

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.formula

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.group_atom_data

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.hassame

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.index

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.insert

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.iter

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.maxR

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.orbital

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.prepend

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.reduce

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.remove

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.reorder

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.repeat

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.replace

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.replace_atom

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.reverse

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.scale

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.specie_index

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.species_index

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.sub

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.swap

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.swap_atom

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.tile




   .. rubric:: Attributes

   .. autosummary::
      





   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.Z

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.atom

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.firsto

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.lasto

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.mass

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.no

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.nspecie

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.nspecies

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.orbitals

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.q0

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.specie

   

   

   
   

   
      
      
      
      

   
      
   
      ~Atoms.species