sisl.physics.DynamicalMatrix
============================















.. currentmodule:: sisl.physics

.. autoclass:: DynamicalMatrix







   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         


   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
            
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         











   .. rubric:: Plotting

   .. autosummary::
      :removeprefix: DynamicalMatrix.

      DynamicalMatrix.plot
      





   

   

   

   

   

   

   

   

   

   

   

   


   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   
      
      DynamicalMatrix.plot.atomicmatrix

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   








   .. rubric:: Methods

   .. autosummary::
      





   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.Dk

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.Rij

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.Sk

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.add

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.append

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.apply_newton

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.astype

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.construct

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.copy

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.create_construct

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.dDk

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.dSk

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.ddDk

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.ddSk

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.edges

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.eig

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.eigenmode

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.eigenvalue

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.eigh

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.eigsh

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.eliminate_zeros

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.empty

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.finalize

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.fromsp

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.iter_nnz

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.iter_orbitals

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.nonzero

   

   

   
   

   
      
         
      
      
      

   

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.prepend

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.prune_range

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.read

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.remove

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.remove_orbital

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.repeat

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.replace

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.reset

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.rij

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.set_nsc

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.spalign

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.spsame

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.sub

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.sub_orbital

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.swap

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.tile

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.toSparseAtom

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.tocsr

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.translate2uc

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.transpose

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.unrepeat

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.untile

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.write




   .. rubric:: Attributes

   .. autosummary::
      





   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.D

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.S

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.dim

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.dkind

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.dtype

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.finalized

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.geometry

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.nnz

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.non_orthogonal

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.orthogonal

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   

   
      
      
      
      

   
      
   
      ~DynamicalMatrix.shape