sisl.physics.EnergyDensityMatrix
================================















.. currentmodule:: sisl.physics

.. autoclass:: EnergyDensityMatrix







   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         


   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
            
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         











   .. rubric:: Plotting

   .. autosummary::
      :removeprefix: EnergyDensityMatrix.

      EnergyDensityMatrix.plot
      





   

   

   

   

   

   

   

   

   

   

   

   

   


   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   
      
      EnergyDensityMatrix.plot.atomicmatrix

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   








   .. rubric:: Methods

   .. autosummary::
      





   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.Ek

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.Rij

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.Sk

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.add

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.append

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.astype

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.bond_order

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.construct

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.copy

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.create_construct

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.dEk

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.dSk

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.ddEk

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.ddSk

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.density

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.edges

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.eig

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.eigh

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.eigsh

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.eliminate_zeros

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.empty

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.finalize

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.fromsp

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.iter_nnz

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.iter_orbitals

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.mulliken

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.nonzero

   

   

   
   

   
      
         
      
      
      

   

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.prepend

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.prune_range

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.read

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.remove

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.remove_orbital

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.repeat

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.replace

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.reset

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.rij

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.set_nsc

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.shift

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.spalign

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.spin_align

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.spin_rotate

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.spsame

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.sub

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.sub_orbital

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.swap

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.tile

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.toSparseAtom

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.tocsr

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.transform

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.translate2uc

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.transpose

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.trs

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.unrepeat

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.untile

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.write




   .. rubric:: Attributes

   .. autosummary::
      





   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.E

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.S

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.dim

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.dkind

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.dtype

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.finalized

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.geometry

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.nnz

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.non_orthogonal

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.orthogonal

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.shape

   

   

   
   

   
      
      
      
      

   
      
   
      ~EnergyDensityMatrix.spin