sisl.physics.densitymatrix.\_densitymatrix
==========================================















.. currentmodule:: sisl.physics.densitymatrix

.. autoclass:: _densitymatrix







   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         


   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
            
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         











   .. rubric:: Plotting

   .. autosummary::
      :removeprefix: _densitymatrix.

      _densitymatrix.plot
      





   

   

   

   

   

   

   

   

   

   

   

   


   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   
      
      _densitymatrix.plot.atomicmatrix

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   

   








   .. rubric:: Methods

   .. autosummary::
      





   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.Rij

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.Sk

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.add

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.append

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.astype

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.bond_order

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.construct

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.copy

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.create_construct

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.dSk

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.ddSk

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.density

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.edges

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.eig

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.eigh

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.eigsh

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.eliminate_zeros

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.empty

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.finalize

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.fromsp

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.iter_nnz

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.iter_orbitals

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.mulliken

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.nonzero

   

   

   
   

   
      
         
      
      
      

   

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.prepend

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.prune_range

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.remove

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.remove_orbital

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.repeat

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.replace

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.reset

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.rij

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.set_nsc

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.spalign

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.spin_align

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.spin_rotate

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.spsame

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.sub

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.sub_orbital

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.swap

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.tile

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.toSparseAtom

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.tocsr

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.transform

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.translate2uc

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.transpose

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.trs

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.unrepeat

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.untile




   .. rubric:: Attributes

   .. autosummary::
      





   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.S

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.dim

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.dkind

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.dtype

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.finalized

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.geometry

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.nnz

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.non_orthogonal

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.orthogonal

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.shape

   

   

   
   

   
      
      
      
      

   
      
   
      ~_densitymatrix.spin