sisl.io.pdbSile
===============















.. currentmodule:: sisl.io

.. autoclass:: pdbSile







   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         


   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
      
         
      
         
      
         

   
      
         
            
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         

   
      
      
         
      
         
      
         











   .. rubric:: Plotting

   .. autosummary::
      :removeprefix: pdbSile.

      pdbSile.plot
      





   

   

   


   

   

   

   

   

   

   

   

   

   

   
      
      pdbSile.plot.geometry

   

   

   

   

   

   

   

   








   .. rubric:: Methods

   .. autosummary::
      





   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.base_directory

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.close

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.dir_file

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   

   
      
         
      
      
      

   

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.read

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.read_geometry

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.read_lattice

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   
      
      

   
      
      
      
      

   

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.write

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.write_geometry

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.write_lattice




   .. rubric:: Attributes

   .. autosummary::
      





   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.base_file

   

   

   
   

   
      
      
      
      

   
      
   
      ~pdbSile.file