sisl.io.pdbSile
- class sisl.io.pdbSile(filename, mode='r', comment=None, *args, **kwargs)
Bases:
Sile
PDB file object
Methods
dir_file
([filename, filename_base])File of the current
Sile
read
(*args, **kwargs)Generic read method which should be overloaded in child-classes
Read geometry from the contained file
Read supercell from the contained file
write
(*args, **kwargs)Generic write method which should be overloaded in child-classes
write_geometry
(geometry)Writes the geometry to the contained file
write_supercell
(sc)Writes the supercell to the contained file
File of the current
Sile
File of the current
Sile
- __init__(filename, mode='r', comment=None, *args, **kwargs)
- plot
Handles all plotting possibilities for a class
- read(*args, **kwargs)
Generic read method which should be overloaded in child-classes
- Parameters
kwargs – keyword arguments will try and search for the attribute
read_<>
and call it with the remaining**kwargs
as arguments.
- to_json()
- write(*args, **kwargs)
Generic write method which should be overloaded in child-classes
- Parameters
**kwargs – keyword arguments will try and search for the attribute write_ and call it with the remaining
**kwargs
as arguments.