sisl.io.siesta.onlysSileSiesta

class sisl.io.siesta.onlysSileSiesta(filename, mode='r', *args, **kwargs)

Geometry and overlap matrix

Methods

`base_directory`([relative_to])	Retrieve the base directory of the file, relative to the path relative_to
`dir_file`([filename, filename_base])	File of the current Sile
`read`(args, *kwargs)	Generic read method which should be overloaded in child-classes
`read_fermi_level`()	Query the Fermi-level contained in the file
`read_geometry`([atoms])	Returns Geometry object from a TranSiesta file
`read_lattice`()	Returns a Lattice object from a TranSiesta file
`read_overlap`(**kwargs)	Returns the overlap matrix from the TranSiesta file
`write`(args, *kwargs)	Generic write method which should be overloaded in child-classes
`base_file`	File of the current Sile
`file`	File of the current Sile
`plot`	Handles all plotting possibilities for a class
`version`	The version of the file

__init__(filename, mode='r', *args, **kwargs): Just to pass away the args and kwargs

base_directory(relative_to='.'): Retrieve the base directory of the file, relative to the path relative_to

read(*args, **kwargs)

Generic read method which should be overloaded in child-classes

Parameters:: kwargs – keyword arguments will try and search for the attribute read_<> and call it with the remaining **kwargs as arguments.

read_fermi_level() → float[source]

Query the Fermi-level contained in the file

read_geometry(atoms: Atoms | Geometry | None = None)[source]

Returns Geometry object from a TranSiesta file

read_lattice() → Lattice[source]

Returns a Lattice object from a TranSiesta file

read_overlap(**kwargs) → Overlap[source]

Returns the overlap matrix from the TranSiesta file

write(*args, **kwargs)

Generic write method which should be overloaded in child-classes

Parameters:: **kwargs – keyword arguments will try and search for the attribute write_ and call it with the remaining **kwargs as arguments.