sisl.io.pdbSile

class sisl.io.pdbSile(filename, *args, **kwargs)

Bases: Sile

PDB file object

Methods

`base_directory`([relative_to])	Retrieve the base directory of the file, relative to the path relative_to
`close`()
`dir_file`([filename, filename_base])	File of the current `Sile`
`read`(args, *kwargs)	Generic read method which should be overloaded in child-classes
`read_geometry`()	Read geometry from the contained file
`read_lattice`()	Read supercell from the contained file
`write`(args, *kwargs)	Generic write method which should be overloaded in child-classes
`write_geometry`(geometry)	Writes the geometry to the contained file
`write_lattice`(lattice)	Writes the supercell to the contained file
`base_file`	File of the current `Sile`
`file`	File of the current `Sile`
`plot`	Handles all plotting possibilities for a class

__init__(filename, mode='r', *args, **kwargs): Just to pass away the args and kwargs

base_directory(relative_to='.'): Retrieve the base directory of the file, relative to the path relative_to

read(*args, **kwargs)

Generic read method which should be overloaded in child-classes

Parameters:: kwargs – keyword arguments will try and search for the attribute read_<> and call it with the remaining **kwargs as arguments.

read_geometry() → Geometry[source]

Read geometry from the contained file

read_lattice() → Lattice[source]

Read supercell from the contained file

write(*args, **kwargs)

Generic write method which should be overloaded in child-classes

Parameters:: **kwargs – keyword arguments will try and search for the attribute write_ and call it with the remaining **kwargs as arguments.

write_geometry(geometry: Geometry)[source]

Writes the geometry to the contained file

write_lattice(lattice: Lattice)[source]

Writes the supercell to the contained file