sisl
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Introduction
Release notes
Contributing
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Citing sisl
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User Guide
Installation
Tutorials
Command line scripts
Toolboxes
Toolboxes
Visualization
ASE
The
sisl.viz
module
Reference documentation
API documentation
sisl
Index
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
_
__call__() (sisl.constant.PhysicalConstant method)
(sisl.mixing.AdaptiveDIISMixer method)
(sisl.mixing.AdaptivePulayMixer method)
(sisl.mixing.DIISMixer method)
(sisl.mixing.LinearMixer method)
(sisl.mixing.PulayMixer method)
(sisl.physics.Bloch method)
__init__() (sisl.Atom method)
(sisl.AtomicOrbital method)
(sisl.Atoms method)
(sisl.constant.PhysicalConstant method)
(sisl.Geometry method)
(sisl.Grid method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.io.axsfSile method)
(sisl.io.bigdft.asciiSileBigDFT method)
(sisl.io.bigdft.SileBigDFT method)
(sisl.io.bigdft.SileBinBigDFT method)
(sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.fhiaims.SileBinFHIaims method)
(sisl.io.fhiaims.SileFHIaims method)
(sisl.io.gulp.fcSileGULP method)
(sisl.io.gulp.gotSileGULP method)
(sisl.io.gulp.SileBinGULP method)
(sisl.io.gulp.SileGULP method)
(sisl.io.moldenSile method)
(sisl.io.openmx.omxSileOpenMX method)
(sisl.io.openmx.SileBinOpenMX method)
(sisl.io.openmx.SileCDFOpenMX method)
(sisl.io.openmx.SileOpenMX method)
(sisl.io.orca.outputSileORCA method)
(sisl.io.orca.SileBinORCA method)
(sisl.io.orca.SileORCA method)
(sisl.io.orca.txtSileORCA method)
(sisl.io.pdbSile method)
(sisl.io.scaleup.orboccSileScaleUp method)
(sisl.io.scaleup.refSileScaleUp method)
(sisl.io.scaleup.rhamSileScaleUp method)
(sisl.io.scaleup.SileBinScaleUp method)
(sisl.io.scaleup.SileScaleUp method)
(sisl.io.siesta.bandsSileSiesta method)
(sisl.io.siesta.dmSileSiesta method)
(sisl.io.siesta.eigSileSiesta method)
(sisl.io.siesta.faSileSiesta method)
(sisl.io.siesta.fcSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.gridSileSiesta method)
(sisl.io.siesta.hsxSileSiesta method)
(sisl.io.siesta.ionncSileSiesta method)
(sisl.io.siesta.ionxmlSileSiesta method)
(sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.onlysSileSiesta method)
(sisl.io.siesta.orbindxSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.siesta.pdosSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
(sisl.io.siesta.SileBinSiesta method)
(sisl.io.siesta.SileCDFSiesta method)
(sisl.io.siesta.SileSiesta method)
(sisl.io.siesta.structSileSiesta method)
(sisl.io.siesta.tsdeSileSiesta method)
(sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.siesta.wfsxSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.Sile method)
(sisl.io.SileBin method)
(sisl.io.SileCDF method)
(sisl.io.SileError method)
(sisl.io.SileInfo method)
(sisl.io.SileWarning method)
(sisl.io.tableSile method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.SileBinTBtrans method)
(sisl.io.tbtrans.SileCDFTBtrans method)
(sisl.io.tbtrans.SileTBtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.io.vasp.carSileVASP method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.doscarSileVASP method)
(sisl.io.vasp.eigenvalSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
(sisl.io.vasp.outSileVASP method)
(sisl.io.vasp.SileBinVASP method)
(sisl.io.vasp.SileVASP method)
(sisl.io.wannier90.SileBinWannier90 method)
(sisl.io.wannier90.SileWannier90 method)
(sisl.io.wannier90.winSileWannier90 method)
(sisl.io.xsfSile method)
(sisl.io.xyzSile method)
(sisl.mixing.AdaptiveDIISMixer method)
(sisl.mixing.AdaptivePulayMixer method)
(sisl.mixing.BaseHistoryMixer method)
(sisl.mixing.BaseMixer method)
(sisl.mixing.DIISMixer method)
(sisl.mixing.History method)
(sisl.mixing.LinearMixer method)
(sisl.mixing.PulayMixer method)
(sisl.oplist.oplist method)
(sisl.Orbital method)
(sisl.physics.BandStructure method)
(sisl.physics.Bloch method)
(sisl.physics.BrillouinZone method)
(sisl.physics.Coefficient method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.electron.CoefficientElectron method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvalueElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.MonkhorstPack method)
(sisl.physics.Overlap method)
(sisl.physics.phonon.CoefficientPhonon method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvaluePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.RealSpaceSE method)
(sisl.physics.RealSpaceSI method)
(sisl.physics.RecursiveSI method)
(sisl.physics.SelfEnergy method)
(sisl.physics.SemiInfinite method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.physics.Spin method)
(sisl.physics.State method)
(sisl.physics.StateC method)
(sisl.physics.WideBandSE method)
(sisl.Quaternion method)
(sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.NullShape method)
(sisl.shape.Shape method)
(sisl.shape.Sphere method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
(sisl.SuperCell method)
(sisl.utils.PropertyDict method)
(sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
A
a2isc() (sisl.Geometry method)
a2o() (sisl.Geometry method)
a2p() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
a2sc() (sisl.Geometry method)
a2transpose() (sisl.Geometry method)
a_buf (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
a_dev (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
a_down() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
a_elec() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
accuracy_reached() (sisl.io.vasp.outSileVASP method)
AdaptiveDIISMixer (class in sisl.mixing)
AdaptivePulayMixer (class in sisl.mixing)
add() (sisl.Atoms method)
(sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseOrbital method)
(sisl.SuperCell method)
add_children() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.SubPlots method)
add_shortcut() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
add_sile() (in module sisl.io)
add_vacuum() (sisl.Geometry method)
(sisl.Grid method)
(sisl.SuperCell method)
Adensity_matrix() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
adjust_weight() (sisl.mixing.AdaptiveDIISMixer method)
(sisl.mixing.AdaptivePulayMixer method)
ADOS() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
agnr() (in module sisl.geom)
align() (sisl.SparseCSR method)
align_norm() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
align_phase() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
alpha (sisl.GTOrbital property)
(sisl.STOrbital property)
angle (sisl.Quaternion property)
angle() (in module sisl.utils)
(sisl.Geometry method)
(sisl.SuperCell method)
animated() (sisl.viz.Animation class method)
(sisl.viz.MultiplePlot class method)
(sisl.viz.Plot class method)
(sisl.viz.SubPlots class method)
Animation (class in sisl.viz)
append() (sisl.Atoms method)
(sisl.Geometry method)
(sisl.Grid method)
(sisl.mixing.History method)
(sisl.oplist.oplist method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseOrbital method)
(sisl.SuperCell method)
apply (sisl.physics.BandStructure attribute)
(sisl.physics.BrillouinZone attribute)
(sisl.physics.MonkhorstPack attribute)
apply() (sisl.Grid method)
apply_newton() (sisl.physics.DynamicalMatrix method)
area() (sisl.Geometry method)
(sisl.Grid method)
(sisl.SuperCell method)
args (sisl.io.SileError attribute)
(sisl.io.SileInfo attribute)
(sisl.io.SileWarning attribute)
as_integer_ratio() (sisl.constant.PhysicalConstant method)
as_primary() (sisl.Geometry method)
asc2uc() (sisl.Geometry method)
asciiSileBigDFT (class in sisl.io.bigdft)
asCoefficient() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.StateC method)
asState() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.StateC method)
atom
,
[1]
Atom (class in sisl)
atom (sisl.Atoms property)
atom_ACOHP() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
atom_ACOOP() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
atom_COHP (sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
atom_COHP() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
atom_COOP (sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
atom_COOP() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
atom_current() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
atom_transmission() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
atomic_mass() (sisl.PeriodicTable method)
AtomicOrbital (class in sisl)
Atoms (class in sisl)
atoms (sisl.Geometry property)
attach() (sisl.Geometry method)
auc2sc() (sisl.Geometry method)
average() (sisl.Grid method)
axsfSile (class in sisl.io)
axyz() (sisl.Geometry method)
B
backends (sisl.viz.Animation attribute)
(sisl.viz.MultiplePlot attribute)
(sisl.viz.SubPlots attribute)
bandsSileSiesta (class in sisl.io.siesta)
BandStructure (class in sisl.physics)
base_file (sisl.io.axsfSile property)
(sisl.io.BaseSile property)
(sisl.io.bigdft.asciiSileBigDFT property)
(sisl.io.bigdft.SileBigDFT property)
(sisl.io.bigdft.SileBinBigDFT property)
(sisl.io.cubeSile property)
(sisl.io.fhiaims.inSileFHIaims property)
(sisl.io.fhiaims.SileBinFHIaims property)
(sisl.io.fhiaims.SileFHIaims property)
(sisl.io.gulp.fcSileGULP property)
(sisl.io.gulp.gotSileGULP property)
(sisl.io.gulp.SileBinGULP property)
(sisl.io.gulp.SileGULP property)
(sisl.io.moldenSile property)
(sisl.io.openmx.omxSileOpenMX property)
(sisl.io.openmx.SileBinOpenMX property)
(sisl.io.openmx.SileCDFOpenMX property)
(sisl.io.openmx.SileOpenMX property)
(sisl.io.orca.outputSileORCA property)
(sisl.io.orca.SileBinORCA property)
(sisl.io.orca.SileORCA property)
(sisl.io.orca.txtSileORCA property)
(sisl.io.pdbSile property)
(sisl.io.scaleup.orboccSileScaleUp property)
(sisl.io.scaleup.refSileScaleUp property)
(sisl.io.scaleup.rhamSileScaleUp property)
(sisl.io.scaleup.SileBinScaleUp property)
(sisl.io.scaleup.SileScaleUp property)
(sisl.io.siesta.bandsSileSiesta property)
(sisl.io.siesta.dmSileSiesta property)
(sisl.io.siesta.eigSileSiesta property)
(sisl.io.siesta.faSileSiesta property)
(sisl.io.siesta.fcSileSiesta property)
(sisl.io.siesta.fdfSileSiesta property)
(sisl.io.siesta.gridncSileSiesta property)
(sisl.io.siesta.gridSileSiesta property)
(sisl.io.siesta.hsxSileSiesta property)
(sisl.io.siesta.ionncSileSiesta property)
(sisl.io.siesta.ionxmlSileSiesta property)
(sisl.io.siesta.kpSileSiesta property)
(sisl.io.siesta.ncSileSiesta property)
(sisl.io.siesta.onlysSileSiesta property)
(sisl.io.siesta.orbindxSileSiesta property)
(sisl.io.siesta.outSileSiesta property)
(sisl.io.siesta.pdosSileSiesta property)
(sisl.io.siesta.rkpSileSiesta property)
(sisl.io.siesta.SileBinSiesta property)
(sisl.io.siesta.SileCDFSiesta property)
(sisl.io.siesta.SileSiesta property)
(sisl.io.siesta.structSileSiesta property)
(sisl.io.siesta.tsdeSileSiesta property)
(sisl.io.siesta.tsgfSileSiesta property)
(sisl.io.siesta.tshsSileSiesta property)
(sisl.io.siesta.tsvncSileSiesta property)
(sisl.io.siesta.wfsxSileSiesta property)
(sisl.io.siesta.xvSileSiesta property)
(sisl.io.Sile property)
(sisl.io.SileBin property)
(sisl.io.SileCDF property)
(sisl.io.tableSile property)
(sisl.io.tbtrans.deltancSileTBtrans property)
(sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.SileBinTBtrans property)
(sisl.io.tbtrans.SileCDFTBtrans property)
(sisl.io.tbtrans.SileTBtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtgfSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
(sisl.io.vasp.carSileVASP property)
(sisl.io.vasp.chgSileVASP property)
(sisl.io.vasp.doscarSileVASP property)
(sisl.io.vasp.eigenvalSileVASP property)
(sisl.io.vasp.locpotSileVASP property)
(sisl.io.vasp.outSileVASP property)
(sisl.io.vasp.SileBinVASP property)
(sisl.io.vasp.SileVASP property)
(sisl.io.wannier90.SileBinWannier90 property)
(sisl.io.wannier90.SileWannier90 property)
(sisl.io.wannier90.winSileWannier90 property)
(sisl.io.xsfSile property)
(sisl.io.xyzSile property)
BaseHistoryMixer (class in sisl.mixing)
BaseMixer (class in sisl.mixing)
BaseSile (class in sisl.io)
basic
bcc() (in module sisl.geom)
bcc_slab() (in module sisl.geom)
BDOS() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
berry_curvature() (in module sisl.physics.electron)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.StateCElectron method)
berry_phase() (in module sisl.physics.electron)
bilayer() (in module sisl.geom)
Bloch (class in sisl.physics)
bloch (sisl.physics.Bloch property)
bloch() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
bond_correct() (sisl.Geometry method)
bond_current() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
bond_transmission() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
bose_einstein() (in module sisl.physics)
BrillouinZone (class in sisl.physics)
btd() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
C
c (in module sisl.constant)
(sisl.physics.Coefficient attribute)
,
[1]
(sisl.physics.electron.CoefficientElectron attribute)
(sisl.physics.electron.EigenstateElectron attribute)
(sisl.physics.electron.EigenvalueElectron attribute)
(sisl.physics.electron.StateCElectron attribute)
(sisl.physics.phonon.CoefficientPhonon attribute)
(sisl.physics.phonon.EigenmodePhonon attribute)
(sisl.physics.phonon.EigenvaluePhonon attribute)
(sisl.physics.phonon.ModeCPhonon attribute)
(sisl.physics.StateC attribute)
,
[1]
call_shortcut() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
carSileVASP (class in sisl.io.vasp)
cell (sisl.Geometry property)
(sisl.Grid property)
(sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
(sisl.physics.BandStructure property)
(sisl.physics.BrillouinZone property)
(sisl.physics.MonkhorstPack property)
(sisl.SuperCell attribute)
cell2length() (sisl.SuperCell method)
center (sisl.shape.Cube property)
(sisl.shape.Cuboid property)
(sisl.shape.Ellipsoid property)
(sisl.shape.NullShape property)
(sisl.shape.Shape property)
(sisl.shape.Sphere property)
center() (sisl.Geometry method)
(sisl.SuperCell method)
change_gauge() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
characters_written (sisl.io.SileError attribute)
chemical_potential (sisl.io.tbtrans.phtavncSilePHtrans attribute)
(sisl.io.tbtrans.phtncSilePHtrans attribute)
chemical_potential() (sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
chgSileVASP (class in sisl.io.vasp)
clear() (sisl.mixing.History method)
(sisl.oplist.oplist method)
(sisl.physics.RealSpaceSE method)
(sisl.physics.RealSpaceSI method)
(sisl.utils.PropertyDict method)
clone() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
close() (sisl.Geometry method)
(sisl.io.axsfSile method)
(sisl.io.bigdft.asciiSileBigDFT method)
(sisl.io.bigdft.SileBigDFT method)
(sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.fhiaims.SileFHIaims method)
(sisl.io.gulp.fcSileGULP method)
(sisl.io.gulp.gotSileGULP method)
(sisl.io.gulp.SileGULP method)
(sisl.io.moldenSile method)
(sisl.io.openmx.omxSileOpenMX method)
(sisl.io.openmx.SileCDFOpenMX method)
(sisl.io.openmx.SileOpenMX method)
(sisl.io.orca.outputSileORCA method)
(sisl.io.orca.SileORCA method)
(sisl.io.orca.txtSileORCA method)
(sisl.io.pdbSile method)
(sisl.io.scaleup.orboccSileScaleUp method)
(sisl.io.scaleup.refSileScaleUp method)
(sisl.io.scaleup.rhamSileScaleUp method)
(sisl.io.scaleup.SileScaleUp method)
(sisl.io.siesta.bandsSileSiesta method)
(sisl.io.siesta.eigSileSiesta method)
(sisl.io.siesta.faSileSiesta method)
(sisl.io.siesta.fcSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.ionncSileSiesta method)
(sisl.io.siesta.ionxmlSileSiesta method)
(sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.orbindxSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.siesta.pdosSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
(sisl.io.siesta.SileCDFSiesta method)
(sisl.io.siesta.SileSiesta method)
(sisl.io.siesta.structSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.Sile method)
(sisl.io.SileCDF method)
(sisl.io.tableSile method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.SileCDFTBtrans method)
(sisl.io.tbtrans.SileTBtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.io.vasp.carSileVASP method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.doscarSileVASP method)
(sisl.io.vasp.eigenvalSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
(sisl.io.vasp.outSileVASP method)
(sisl.io.vasp.SileVASP method)
(sisl.io.wannier90.SileWannier90 method)
(sisl.io.wannier90.winSileWannier90 method)
(sisl.io.xsfSile method)
(sisl.io.xyzSile method)
close_sc() (sisl.Geometry method)
coeff (sisl.GTOrbital property)
(sisl.STOrbital property)
Coefficient (class in sisl.physics)
CoefficientElectron (class in sisl.physics.electron)
CoefficientPhonon (class in sisl.physics.phonon)
coefficients() (sisl.mixing.AdaptiveDIISMixer method)
(sisl.mixing.AdaptivePulayMixer method)
(sisl.mixing.DIISMixer method)
(sisl.mixing.PulayMixer method)
COHP() (sisl.physics.electron.EigenstateElectron method)
col (sisl.SparseCSR attribute)
,
[1]
cold() (in module sisl.physics)
completed() (sisl.io.orca.outputSileORCA method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.vasp.outSileVASP method)
conductivity() (in module sisl.physics.electron)
conj() (sisl.Quaternion method)
conjugate() (sisl.constant.PhysicalConstant method)
construct() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
COOP() (sisl.physics.electron.EigenstateElectron method)
COP() (in module sisl.physics.electron)
(sisl.physics.electron.EigenstateElectron method)
copy() (sisl.Atom method)
(sisl.AtomicOrbital method)
(sisl.Atoms method)
(sisl.Geometry method)
(sisl.Grid method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.oplist.oplist method)
(sisl.Orbital method)
(sisl.physics.BandStructure method)
(sisl.physics.BrillouinZone method)
(sisl.physics.Coefficient method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.electron.CoefficientElectron method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvalueElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.MonkhorstPack method)
(sisl.physics.Overlap method)
(sisl.physics.phonon.CoefficientPhonon method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvaluePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.physics.Spin method)
(sisl.physics.State method)
(sisl.physics.StateC method)
(sisl.Quaternion method)
(sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.Sphere method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
(sisl.SuperCell method)
(sisl.utils.PropertyDict method)
(sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
count() (sisl.oplist.oplist method)
cpu_time() (sisl.io.vasp.outSileVASP method)
create_construct() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
cross_section() (sisl.Grid method)
Cube (class in sisl.shape)
cubeSile (class in sisl.io)
Cuboid (class in sisl.shape)
current (sisl.io.tbtrans.phtavncSilePHtrans attribute)
(sisl.io.tbtrans.phtncSilePHtrans attribute)
(sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
current() (sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
current_parameter (sisl.io.tbtrans.phtavncSilePHtrans attribute)
(sisl.io.tbtrans.phtncSilePHtrans attribute)
(sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
current_parameter() (sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
D
D (sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
data (sisl.SparseCSR property)
dcell (sisl.Grid property)
ddDk() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
ddEk() (sisl.physics.EnergyDensityMatrix method)
ddHk() (sisl.physics.Hamiltonian method)
dDk() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
ddSk() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
decorate() (sisl.oplist.oplist class method)
degenerate() (sisl.physics.Coefficient method)
(sisl.physics.electron.CoefficientElectron method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvalueElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.phonon.CoefficientPhonon method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvaluePhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.StateC method)
degenerate_decouple() (in module sisl.physics)
degree (sisl.Quaternion property)
dEk() (sisl.physics.EnergyDensityMatrix method)
delete_columns() (sisl.SparseCSR method)
deltancSileTBtrans (class in sisl.io.tbtrans)
density() (sisl.physics.DensityMatrix method)
(sisl.physics.EnergyDensityMatrix method)
density_matrix (sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
density_matrix() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
DensityMatrix (class in sisl.physics)
derivative() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.StateC method)
dHk() (sisl.physics.Hamiltonian method)
diagonal() (sisl.SparseCSR method)
diags() (sisl.SparseCSR method)
diamond() (in module sisl.geom)
DIISMixer (class in sisl.mixing)
dim (sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
(sisl.SparseAtom property)
(sisl.SparseCSR property)
(sisl.SparseOrbital property)
dir_file() (sisl.io.axsfSile method)
(sisl.io.BaseSile method)
(sisl.io.bigdft.asciiSileBigDFT method)
(sisl.io.bigdft.SileBigDFT method)
(sisl.io.bigdft.SileBinBigDFT method)
(sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.fhiaims.SileBinFHIaims method)
(sisl.io.fhiaims.SileFHIaims method)
(sisl.io.gulp.fcSileGULP method)
(sisl.io.gulp.gotSileGULP method)
(sisl.io.gulp.SileBinGULP method)
(sisl.io.gulp.SileGULP method)
(sisl.io.moldenSile method)
(sisl.io.openmx.omxSileOpenMX method)
(sisl.io.openmx.SileBinOpenMX method)
(sisl.io.openmx.SileCDFOpenMX method)
(sisl.io.openmx.SileOpenMX method)
(sisl.io.orca.outputSileORCA method)
(sisl.io.orca.SileBinORCA method)
(sisl.io.orca.SileORCA method)
(sisl.io.orca.txtSileORCA method)
(sisl.io.pdbSile method)
(sisl.io.scaleup.orboccSileScaleUp method)
(sisl.io.scaleup.refSileScaleUp method)
(sisl.io.scaleup.rhamSileScaleUp method)
(sisl.io.scaleup.SileBinScaleUp method)
(sisl.io.scaleup.SileScaleUp method)
(sisl.io.siesta.bandsSileSiesta method)
(sisl.io.siesta.dmSileSiesta method)
(sisl.io.siesta.eigSileSiesta method)
(sisl.io.siesta.faSileSiesta method)
(sisl.io.siesta.fcSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.gridSileSiesta method)
(sisl.io.siesta.hsxSileSiesta method)
(sisl.io.siesta.ionncSileSiesta method)
(sisl.io.siesta.ionxmlSileSiesta method)
(sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.onlysSileSiesta method)
(sisl.io.siesta.orbindxSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.siesta.pdosSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
(sisl.io.siesta.SileBinSiesta method)
(sisl.io.siesta.SileCDFSiesta method)
(sisl.io.siesta.SileSiesta method)
(sisl.io.siesta.structSileSiesta method)
(sisl.io.siesta.tsdeSileSiesta method)
(sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.siesta.wfsxSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.Sile method)
(sisl.io.SileBin method)
(sisl.io.SileCDF method)
(sisl.io.tableSile method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.SileBinTBtrans method)
(sisl.io.tbtrans.SileCDFTBtrans method)
(sisl.io.tbtrans.SileTBtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.io.vasp.carSileVASP method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.doscarSileVASP method)
(sisl.io.vasp.eigenvalSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
(sisl.io.vasp.outSileVASP method)
(sisl.io.vasp.SileBinVASP method)
(sisl.io.vasp.SileVASP method)
(sisl.io.wannier90.SileBinWannier90 method)
(sisl.io.wannier90.SileWannier90 method)
(sisl.io.wannier90.winSileWannier90 method)
(sisl.io.xsfSile method)
(sisl.io.xyzSile method)
direction() (in module sisl.utils)
DIRICHLET (sisl.Grid attribute)
disk_usage() (sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
dispatch_event() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
displacement() (sisl.physics.phonon.EigenmodePhonon method)
distance() (sisl.Geometry method)
Dk() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
dkind (sisl.Grid property)
(sisl.physics.Coefficient property)
(sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.electron.CoefficientElectron property)
(sisl.physics.electron.EigenstateElectron property)
(sisl.physics.electron.EigenvalueElectron property)
(sisl.physics.electron.EigenvectorElectron property)
(sisl.physics.electron.StateCElectron property)
(sisl.physics.electron.StateElectron property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.phonon.CoefficientPhonon property)
(sisl.physics.phonon.EigenmodePhonon property)
(sisl.physics.phonon.EigenvaluePhonon property)
(sisl.physics.phonon.EigenvectorPhonon property)
(sisl.physics.phonon.ModeCPhonon property)
(sisl.physics.phonon.ModePhonon property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
(sisl.physics.Spin property)
(sisl.physics.State property)
(sisl.physics.StateC property)
(sisl.SparseAtom property)
(sisl.SparseCSR property)
(sisl.SparseOrbital property)
dmSileSiesta (class in sisl.io.siesta)
DOS() (in module sisl.physics.electron)
(in module sisl.physics.phonon)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvalueElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvaluePhonon method)
doscarSileVASP (class in sisl.io.vasp)
dSk() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
dtype (sisl.Grid property)
(sisl.physics.Coefficient property)
(sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.electron.CoefficientElectron property)
(sisl.physics.electron.EigenstateElectron property)
(sisl.physics.electron.EigenvalueElectron property)
(sisl.physics.electron.EigenvectorElectron property)
(sisl.physics.electron.StateCElectron property)
(sisl.physics.electron.StateElectron property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.phonon.CoefficientPhonon property)
(sisl.physics.phonon.EigenmodePhonon property)
(sisl.physics.phonon.EigenvaluePhonon property)
(sisl.physics.phonon.EigenvectorPhonon property)
(sisl.physics.phonon.ModeCPhonon property)
(sisl.physics.phonon.ModePhonon property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
(sisl.physics.Spin property)
(sisl.physics.State property)
(sisl.physics.StateC property)
(sisl.SparseAtom property)
(sisl.SparseCSR property)
(sisl.SparseOrbital property)
dvolume (sisl.Grid property)
DynamicalMatrix (class in sisl.physics)
E
E (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
(sisl.physics.EnergyDensityMatrix property)
edge_length (sisl.shape.Cube property)
(sisl.shape.Cuboid property)
edges() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
effective_mass() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.StateCElectron method)
eig (sisl.physics.electron.EigenstateElectron property)
(sisl.physics.electron.EigenvalueElectron property)
eig() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
eigenmode() (sisl.physics.DynamicalMatrix method)
EigenmodePhonon (class in sisl.physics.phonon)
eigenstate() (sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.physics.Hamiltonian method)
EigenstateElectron (class in sisl.physics.electron)
eigenvalSileVASP (class in sisl.io.vasp)
eigenvalue() (sisl.physics.DynamicalMatrix method)
(sisl.physics.Hamiltonian method)
EigenvalueElectron (class in sisl.physics.electron)
EigenvaluePhonon (class in sisl.physics.phonon)
EigenvectorElectron (class in sisl.physics.electron)
EigenvectorPhonon (class in sisl.physics.phonon)
eigh() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
eigsh() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
eigSileSiesta (class in sisl.io.siesta)
Eindex() (sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
Ek() (sisl.physics.EnergyDensityMatrix method)
elecs (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
electron_temperature (sisl.io.tbtrans.phtavncSilePHtrans attribute)
(sisl.io.tbtrans.phtncSilePHtrans attribute)
electron_temperature() (sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
elements (sisl.mixing.History property)
eliminate_zeros() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
Ellipsoid (class in sisl.shape)
empty() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
EnergyDensityMatrix (class in sisl.physics)
entry_points (sisl.viz.Animation attribute)
(sisl.viz.MultiplePlot attribute)
(sisl.viz.SubPlots attribute)
entry_points_help() (sisl.viz.Animation class method)
(sisl.viz.MultiplePlot class method)
(sisl.viz.Plot class method)
(sisl.viz.SubPlots class method)
equal() (sisl.Atom method)
(sisl.AtomicOrbital method)
(sisl.Atoms method)
(sisl.Geometry method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.Orbital method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
(sisl.SuperCell method)
erange() (in module sisl.utils)
errno (sisl.io.SileError attribute)
eta() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
expand() (sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.NullShape method)
(sisl.shape.Sphere method)
extend() (sisl.oplist.oplist method)
F
f (sisl.SphericalOrbital attribute)
fano (sisl.io.tbtrans.phtavncSilePHtrans attribute)
(sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtavncSileTBtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
fano() (sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
faSileSiesta (class in sisl.io.siesta)
fcc() (in module sisl.geom)
fcc_slab() (in module sisl.geom)
fcSileGULP (class in sisl.io.gulp)
fcSileSiesta (class in sisl.io.siesta)
fdfSileSiesta (class in sisl.io.siesta)
fermi_dirac() (in module sisl.physics)
fermi_level() (sisl.physics.Hamiltonian method)
file (sisl.io.axsfSile property)
(sisl.io.BaseSile property)
(sisl.io.bigdft.asciiSileBigDFT property)
(sisl.io.bigdft.SileBigDFT property)
(sisl.io.bigdft.SileBinBigDFT property)
(sisl.io.cubeSile property)
(sisl.io.fhiaims.inSileFHIaims property)
(sisl.io.fhiaims.SileBinFHIaims property)
(sisl.io.fhiaims.SileFHIaims property)
(sisl.io.gulp.fcSileGULP property)
(sisl.io.gulp.gotSileGULP property)
(sisl.io.gulp.SileBinGULP property)
(sisl.io.gulp.SileGULP property)
(sisl.io.moldenSile property)
(sisl.io.openmx.omxSileOpenMX property)
(sisl.io.openmx.SileBinOpenMX property)
(sisl.io.openmx.SileCDFOpenMX property)
(sisl.io.openmx.SileOpenMX property)
(sisl.io.orca.outputSileORCA property)
(sisl.io.orca.SileBinORCA property)
(sisl.io.orca.SileORCA property)
(sisl.io.orca.txtSileORCA property)
(sisl.io.pdbSile property)
(sisl.io.scaleup.orboccSileScaleUp property)
(sisl.io.scaleup.refSileScaleUp property)
(sisl.io.scaleup.rhamSileScaleUp property)
(sisl.io.scaleup.SileBinScaleUp property)
(sisl.io.scaleup.SileScaleUp property)
(sisl.io.siesta.bandsSileSiesta property)
(sisl.io.siesta.dmSileSiesta property)
(sisl.io.siesta.eigSileSiesta property)
(sisl.io.siesta.faSileSiesta property)
(sisl.io.siesta.fcSileSiesta property)
(sisl.io.siesta.fdfSileSiesta property)
(sisl.io.siesta.gridncSileSiesta property)
(sisl.io.siesta.gridSileSiesta property)
(sisl.io.siesta.hsxSileSiesta property)
(sisl.io.siesta.ionncSileSiesta property)
(sisl.io.siesta.ionxmlSileSiesta property)
(sisl.io.siesta.kpSileSiesta property)
(sisl.io.siesta.ncSileSiesta property)
(sisl.io.siesta.onlysSileSiesta property)
(sisl.io.siesta.orbindxSileSiesta property)
(sisl.io.siesta.outSileSiesta property)
(sisl.io.siesta.pdosSileSiesta property)
(sisl.io.siesta.rkpSileSiesta property)
(sisl.io.siesta.SileBinSiesta property)
(sisl.io.siesta.SileCDFSiesta property)
(sisl.io.siesta.SileSiesta property)
(sisl.io.siesta.structSileSiesta property)
(sisl.io.siesta.tsdeSileSiesta property)
(sisl.io.siesta.tsgfSileSiesta property)
(sisl.io.siesta.tshsSileSiesta property)
(sisl.io.siesta.tsvncSileSiesta property)
(sisl.io.siesta.wfsxSileSiesta property)
(sisl.io.siesta.xvSileSiesta property)
(sisl.io.Sile property)
(sisl.io.SileBin property)
(sisl.io.SileCDF property)
(sisl.io.tableSile property)
(sisl.io.tbtrans.deltancSileTBtrans property)
(sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.SileBinTBtrans property)
(sisl.io.tbtrans.SileCDFTBtrans property)
(sisl.io.tbtrans.SileTBtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtgfSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
(sisl.io.vasp.carSileVASP property)
(sisl.io.vasp.chgSileVASP property)
(sisl.io.vasp.doscarSileVASP property)
(sisl.io.vasp.eigenvalSileVASP property)
(sisl.io.vasp.locpotSileVASP property)
(sisl.io.vasp.outSileVASP property)
(sisl.io.vasp.SileBinVASP property)
(sisl.io.vasp.SileVASP property)
(sisl.io.wannier90.SileBinWannier90 property)
(sisl.io.wannier90.SileWannier90 property)
(sisl.io.wannier90.winSileWannier90 property)
(sisl.io.xsfSile property)
(sisl.io.xyzSile property)
fileindex() (in module sisl.utils)
filename (sisl.io.SileError attribute)
filename2 (sisl.io.SileError attribute)
fill() (sisl.Grid method)
finalize() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
finalized (sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
(sisl.SparseAtom property)
(sisl.SparseCSR property)
(sisl.SparseOrbital property)
firsto (sisl.Atoms property)
(sisl.Geometry property)
fit() (sisl.SuperCell method)
follow() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
from_plotly() (sisl.viz.Animation class method)
(sisl.viz.MultiplePlot class method)
(sisl.viz.Plot class method)
(sisl.viz.SubPlots class method)
fromhex() (sisl.constant.PhysicalConstant method)
fromkeys() (sisl.utils.PropertyDict method)
fromsp() (sisl.physics.DensityMatrix class method)
(sisl.physics.DynamicalMatrix class method)
(sisl.physics.EnergyDensityMatrix class method)
(sisl.physics.Hamiltonian class method)
(sisl.physics.Overlap class method)
(sisl.physics.SparseOrbitalBZ class method)
(sisl.physics.SparseOrbitalBZSpin class method)
(sisl.SparseAtom class method)
(sisl.SparseCSR class method)
(sisl.SparseOrbital class method)
fxyz (sisl.Geometry property)
G
G (in module sisl.constant)
G0 (in module sisl.constant)
gaussian() (in module sisl.physics)
geom (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
geometry
Geometry (class in sisl)
geometry (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
(sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
(sisl.SparseAtom property)
(sisl.SparseOrbital property)
geometry_group() (sisl.io.vasp.carSileVASP static method)
(sisl.io.vasp.chgSileVASP static method)
(sisl.io.vasp.doscarSileVASP static method)
(sisl.io.vasp.eigenvalSileVASP static method)
(sisl.io.vasp.locpotSileVASP static method)
(sisl.io.vasp.outSileVASP static method)
(sisl.io.vasp.SileBinVASP static method)
(sisl.io.vasp.SileVASP static method)
get() (sisl.io.openmx.omxSileOpenMX method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.utils.PropertyDict method)
get_class_param() (sisl.viz.Animation class method)
(sisl.viz.MultiplePlot class method)
(sisl.viz.Plot class method)
(sisl.viz.SubPlots class method)
get_distribution() (in module sisl.physics)
get_figure() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
get_figure_methods (sisl.viz.Animation property)
(sisl.viz.MultiplePlot property)
(sisl.viz.Plot property)
(sisl.viz.SubPlots property)
get_param() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
get_setting() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
get_settings_group() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
get_sile() (in module sisl.io)
(sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
get_sile_class() (in module sisl.io)
get_siles() (in module sisl.io)
gotSileGULP (class in sisl.io.gulp)
graphene() (in module sisl.geom)
graphene_nanoribbon() (in module sisl.geom)
green() (sisl.physics.RealSpaceSE method)
(sisl.physics.RealSpaceSI method)
(sisl.physics.RecursiveSI method)
Grid (class in sisl)
grid() (sisl.physics.MonkhorstPack class method)
grid_unit (sisl.io.siesta.gridSileSiesta attribute)
gridncSileSiesta (class in sisl.io.siesta)
grids (sisl.io.siesta.ncSileSiesta property)
gridSileSiesta (class in sisl.io.siesta)
group_atom_data() (sisl.Atoms method)
GTOrbital (class in sisl)
H
h (in module sisl.constant)
H (sisl.physics.Hamiltonian property)
Hamiltonian (class in sisl.physics)
has_level() (sisl.io.tbtrans.deltancSileTBtrans method)
has_shortcut() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
has_these_settings() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
hassame() (sisl.Atoms method)
hbar (in module sisl.constant)
hcp() (in module sisl.geom)
heaviside() (in module sisl.physics)
hex() (sisl.constant.PhysicalConstant method)
History (class in sisl.mixing)
history (sisl.mixing.AdaptiveDIISMixer property)
(sisl.mixing.AdaptivePulayMixer property)
(sisl.mixing.BaseHistoryMixer property)
(sisl.mixing.DIISMixer property)
(sisl.mixing.PulayMixer property)
history_max (sisl.mixing.History attribute)
Hk() (sisl.physics.Hamiltonian method)
HkSk() (sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
honeycomb() (in module sisl.geom)
hsxSileSiesta (class in sisl.io.siesta)
hw (sisl.physics.phonon.EigenmodePhonon property)
(sisl.physics.phonon.EigenvaluePhonon property)
HydrogenicOrbital (class in sisl)
I
icell (sisl.Geometry property)
(sisl.Grid property)
(sisl.SuperCell property)
imag (sisl.constant.PhysicalConstant attribute)
in_primitive() (sisl.physics.BandStructure static method)
(sisl.physics.BrillouinZone static method)
(sisl.physics.MonkhorstPack static method)
includes() (sisl.io.siesta.fdfSileSiesta method)
index() (sisl.Atom method)
(sisl.Atoms method)
(sisl.Grid method)
(sisl.oplist.oplist method)
index2xyz() (sisl.Grid method)
index_fold() (sisl.Grid method)
index_truncate() (sisl.Grid method)
info (sisl.physics.Coefficient attribute)
,
[1]
(sisl.physics.electron.CoefficientElectron attribute)
(sisl.physics.electron.EigenstateElectron attribute)
(sisl.physics.electron.EigenvalueElectron attribute)
(sisl.physics.electron.EigenvectorElectron attribute)
(sisl.physics.electron.StateCElectron attribute)
(sisl.physics.electron.StateElectron attribute)
(sisl.physics.phonon.CoefficientPhonon attribute)
(sisl.physics.phonon.EigenmodePhonon attribute)
(sisl.physics.phonon.EigenvaluePhonon attribute)
(sisl.physics.phonon.EigenvectorPhonon attribute)
(sisl.physics.phonon.ModeCPhonon attribute)
(sisl.physics.phonon.ModePhonon attribute)
(sisl.physics.State attribute)
,
[1]
(sisl.physics.StateC attribute)
,
[1]
info() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
init_all_plots() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.SubPlots method)
init_settings() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
initialize() (sisl.physics.RealSpaceSE method)
(sisl.physics.RealSpaceSI method)
inner() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
insert() (sisl.Atoms method)
(sisl.Geometry method)
(sisl.oplist.oplist method)
insert_childplot() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.SubPlots method)
insert_jump() (sisl.physics.BandStructure method)
inSileFHIaims (class in sisl.io.fhiaims)
interp() (sisl.Grid method)
ionncSileSiesta (class in sisl.io.siesta)
ionxmlSileSiesta (class in sisl.io.siesta)
ipr() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
iR() (sisl.Geometry method)
is_cartesian() (sisl.SuperCell method)
is_colinear (sisl.physics.Spin property)
is_diagonal (sisl.physics.Spin property)
is_integer() (sisl.constant.PhysicalConstant method)
is_noncolinear (sisl.physics.Spin property)
is_orthogonal() (sisl.Geometry method)
(sisl.Grid method)
(sisl.SuperCell method)
is_polarized (sisl.physics.Spin property)
is_spinorbit (sisl.physics.Spin property)
is_unpolarized (sisl.physics.Spin property)
isc_off (sisl.Geometry property)
(sisl.Grid property)
(sisl.SuperCell property)
isosurface() (sisl.Grid method)
items() (sisl.utils.PropertyDict method)
iter() (sisl.Atom method)
(sisl.Atoms method)
(sisl.Geometry method)
(sisl.io.openmx.SileCDFOpenMX method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.ionncSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.SileCDFSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.SileCDF method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.SileCDFTBtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.physics.BandStructure method)
(sisl.physics.BrillouinZone method)
(sisl.physics.Coefficient method)
(sisl.physics.electron.CoefficientElectron method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvalueElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.MonkhorstPack method)
(sisl.physics.phonon.CoefficientPhonon method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvaluePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
iter_block() (sisl.Geometry method)
iter_block_rand() (sisl.Geometry method)
iter_block_shape() (sisl.Geometry method)
iter_nnz() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
iter_orbitals() (sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
iter_shape() (in module sisl.utils)
iter_species() (sisl.Geometry method)
K
k (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
(sisl.physics.BandStructure property)
(sisl.physics.BrillouinZone property)
(sisl.physics.MonkhorstPack property)
keys() (sisl.utils.PropertyDict method)
kind (sisl.physics.Spin property)
kindex() (sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
kpSileSiesta (class in sisl.io.siesta)
kpt (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
kT (sisl.io.tbtrans.phtavncSilePHtrans attribute)
(sisl.io.tbtrans.phtncSilePHtrans attribute)
kT() (sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
L
l (sisl.AtomicOrbital property)
(sisl.GTOrbital property)
(sisl.HydrogenicOrbital property)
(sisl.SphericalOrbital property)
(sisl.STOrbital property)
lasto (sisl.Atoms property)
(sisl.Geometry property)
(sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
length (sisl.Geometry property)
(sisl.Grid property)
(sisl.SuperCell property)
lineark() (sisl.physics.BandStructure method)
LinearMixer (class in sisl.mixing)
lineartick() (sisl.physics.BandStructure method)
list2str() (in module sisl.utils)
listen() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
locpotSileVASP (class in sisl.io.vasp)
lorentzian() (in module sisl.physics)
lstranges() (in module sisl.utils)
M
m (sisl.AtomicOrbital property)
(sisl.GTOrbital property)
(sisl.HydrogenicOrbital property)
(sisl.STOrbital property)
m_e (in module sisl.constant)
m_p (in module sisl.constant)
mass (sisl.Atom property)
(sisl.Atoms property)
(sisl.Geometry property)
math_eval() (in module sisl.utils)
matrix
max_elements (sisl.mixing.History property)
maxR() (sisl.Atom method)
(sisl.Atoms method)
(sisl.Geometry method)
mean() (sisl.Grid method)
merge() (sisl.io.tbtrans.deltancSileTBtrans class method)
(sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
mgrid() (sisl.Grid class method)
mirror() (sisl.Geometry method)
mix() (sisl.mixing.AdaptiveDIISMixer method)
(sisl.mixing.AdaptivePulayMixer method)
(sisl.mixing.DIISMixer method)
(sisl.mixing.PulayMixer method)
mode (sisl.physics.phonon.EigenmodePhonon property)
(sisl.physics.phonon.EigenvectorPhonon property)
(sisl.physics.phonon.ModeCPhonon property)
(sisl.physics.phonon.ModePhonon property)
ModeCPhonon (class in sisl.physics.phonon)
ModePhonon (class in sisl.physics.phonon)
modify_param() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
module
sisl
sisl.constant
sisl.geom
sisl.io
sisl.io.bigdft
sisl.io.fhiaims
sisl.io.gulp
sisl.io.openmx
sisl.io.orca
sisl.io.scaleup
sisl.io.siesta
sisl.io.tbtrans
sisl.io.vasp
sisl.io.wannier90
sisl.mixing
sisl.physics
sisl.physics.electron
sisl.physics.phonon
sisl.shape
sisl.unit
sisl.unit.siesta
sisl.utils
moldenSile (class in sisl.io)
molecules (sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
MonkhorstPack (class in sisl.physics)
move() (sisl.Geometry method)
(sisl.SuperCell method)
mu() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
mulliken() (sisl.physics.DensityMatrix method)
(sisl.physics.EnergyDensityMatrix method)
multiple() (sisl.viz.Animation class method)
(sisl.viz.MultiplePlot class method)
(sisl.viz.Plot class method)
(sisl.viz.SubPlots class method)
MultiplePlot (class in sisl.viz)
N
n (sisl.AtomicOrbital property)
(sisl.GTOrbital property)
(sisl.HydrogenicOrbital property)
(sisl.STOrbital property)
n_btd() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
n_s (sisl.Geometry property)
(sisl.Grid property)
(sisl.SuperCell attribute)
na (sisl.Geometry property)
(sisl.io.orca.outputSileORCA property)
(sisl.io.orca.txtSileORCA property)
(sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
na_b (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
na_buffer (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
na_d (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
na_dev (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
na_down() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
na_s (sisl.Geometry property)
na_u (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
name() (sisl.AtomicOrbital method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.Orbital method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
names (sisl.Geometry property)
nanoribbon() (in module sisl.geom)
nanotube() (in module sisl.geom)
ncol (sisl.SparseCSR attribute)
,
[1]
ncSileSiesta (class in sisl.io.siesta)
nE (sisl.io.tbtrans.phtavncSilePHtrans property)
ne (sisl.io.tbtrans.phtavncSilePHtrans property)
nE (sisl.io.tbtrans.phtncSilePHtrans property)
ne (sisl.io.tbtrans.phtncSilePHtrans property)
nE (sisl.io.tbtrans.phtprojncSilePHtrans property)
ne (sisl.io.tbtrans.phtprojncSilePHtrans property)
nE (sisl.io.tbtrans.phtsencSilePHtrans property)
ne (sisl.io.tbtrans.phtsencSilePHtrans property)
nE (sisl.io.tbtrans.tbtavncSileTBtrans property)
ne (sisl.io.tbtrans.tbtavncSileTBtrans property)
nE (sisl.io.tbtrans.tbtncSileTBtrans property)
ne (sisl.io.tbtrans.tbtncSileTBtrans property)
nE (sisl.io.tbtrans.tbtprojncSileTBtrans property)
ne (sisl.io.tbtrans.tbtprojncSileTBtrans property)
nE (sisl.io.tbtrans.tbtsencSileTBtrans property)
ne (sisl.io.tbtrans.tbtsencSileTBtrans property)
NEUMANN (sisl.Grid attribute)
new (sisl.Geometry attribute)
nk (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
nkpt (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
nnz (sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
(sisl.SparseAtom property)
(sisl.SparseCSR property)
(sisl.SparseOrbital property)
no (sisl.Atom property)
(sisl.Atoms property)
(sisl.Geometry property)
(sisl.io.orca.outputSileORCA property)
(sisl.io.orca.txtSileORCA property)
(sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
no_d (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
no_down() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
no_e() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
no_s (sisl.Geometry property)
no_u (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
noise_power (sisl.io.tbtrans.phtavncSilePHtrans attribute)
(sisl.io.tbtrans.phtncSilePHtrans attribute)
(sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtavncSileTBtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
noise_power() (sisl.io.tbtrans.tbtncSileTBtrans method)
non_orthogonal (sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
NONCOLINEAR (sisl.physics.Spin attribute)
nonzero() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
norm() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
(sisl.Quaternion method)
norm2() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
normalize() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
nsc (sisl.Geometry property)
(sisl.Grid property)
(sisl.SuperCell attribute)
nspecie (sisl.Atoms property)
NullShape (class in sisl.shape)
O
o2a() (sisl.Geometry method)
o2isc() (sisl.Geometry method)
o2p() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
o2sc() (sisl.Geometry method)
o2transpose() (sisl.Geometry method)
o_dev (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
occupation() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvalueElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvaluePhonon method)
offset() (sisl.SuperCell method)
omxSileOpenMX (class in sisl.io.openmx)
onlysSileSiesta (class in sisl.io.siesta)
OPEN (sisl.Grid attribute)
oplist (class in sisl.oplist)
optimize_nsc() (sisl.Geometry method)
orb (sisl.AtomicOrbital property)
(sisl.HydrogenicOrbital property)
orbindxSileSiesta (class in sisl.io.siesta)
orbital
Orbital (class in sisl)
orbital() (sisl.Atoms method)
orbital_ACOHP() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
orbital_ACOOP() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
orbital_COHP (sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
orbital_COHP() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
orbital_COOP (sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
orbital_COOP() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
orbital_current() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
orbital_momentum() (sisl.physics.DensityMatrix method)
orbital_transmission() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
orbitals (sisl.Atom property)
(sisl.Atoms property)
(sisl.Geometry property)
orboccSileScaleUp (class in sisl.io.scaleup)
origin (sisl.Geometry property)
(sisl.Grid property)
(sisl.shape.Cube property)
(sisl.shape.Cuboid property)
(sisl.SuperCell property)
origo (sisl.Geometry property)
(sisl.Grid property)
oRij() (sisl.Geometry method)
orij() (sisl.Geometry method)
orthogonal (sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
osc2uc() (sisl.Geometry method)
ouc2sc() (sisl.Geometry method)
outer() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
outputSileORCA (class in sisl.io.orca)
outSileSiesta (class in sisl.io.siesta)
outSileVASP (class in sisl.io.vasp)
Overlap (class in sisl.physics)
overlap() (sisl.Geometry method)
P
P (sisl.AtomicOrbital property)
(sisl.HydrogenicOrbital property)
parallel() (sisl.SuperCell method)
param_circle() (sisl.physics.BandStructure static method)
(sisl.physics.BrillouinZone static method)
(sisl.physics.MonkhorstPack static method)
parameters() (sisl.SuperCell method)
parametrize() (sisl.physics.BandStructure static method)
(sisl.physics.BrillouinZone static method)
(sisl.physics.MonkhorstPack static method)
paramGroups (sisl.viz.Plot attribute)
params (sisl.viz.Plot attribute)
parent (sisl.physics.Coefficient attribute)
,
[1]
(sisl.physics.electron.CoefficientElectron attribute)
(sisl.physics.electron.EigenstateElectron attribute)
(sisl.physics.electron.EigenvalueElectron attribute)
(sisl.physics.electron.EigenvectorElectron attribute)
(sisl.physics.electron.StateCElectron attribute)
(sisl.physics.electron.StateElectron attribute)
(sisl.physics.phonon.CoefficientPhonon attribute)
(sisl.physics.phonon.EigenmodePhonon attribute)
(sisl.physics.phonon.EigenvaluePhonon attribute)
(sisl.physics.phonon.EigenvectorPhonon attribute)
(sisl.physics.phonon.ModeCPhonon attribute)
(sisl.physics.phonon.ModePhonon attribute)
(sisl.physics.State attribute)
,
[1]
(sisl.physics.StateC attribute)
,
[1]
pdbSile (class in sisl.io)
PDOS() (in module sisl.physics.electron)
(in module sisl.physics.phonon)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
pdosSileSiesta (class in sisl.io.siesta)
PERIODIC (sisl.Grid attribute)
PeriodicTable (class in sisl)
phase() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
phonon_temperature() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
phtavncSilePHtrans (class in sisl.io.tbtrans)
phtncSilePHtrans (class in sisl.io.tbtrans)
phtprojncSilePHtrans (class in sisl.io.tbtrans)
phtsencSilePHtrans (class in sisl.io.tbtrans)
PhysicalConstant (class in sisl.constant)
pivot() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
pivot_down() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
plane() (sisl.SuperCell method)
Plot (class in sisl.viz)
plot (sisl.Geometry attribute)
(sisl.Grid attribute)
(sisl.io.axsfSile attribute)
(sisl.io.bigdft.asciiSileBigDFT attribute)
(sisl.io.cubeSile attribute)
(sisl.io.fhiaims.inSileFHIaims attribute)
(sisl.io.gulp.gotSileGULP attribute)
(sisl.io.openmx.omxSileOpenMX attribute)
(sisl.io.orca.txtSileORCA attribute)
(sisl.io.pdbSile attribute)
(sisl.io.scaleup.refSileScaleUp attribute)
(sisl.io.scaleup.rhamSileScaleUp attribute)
(sisl.io.siesta.bandsSileSiesta attribute)
(sisl.io.siesta.fdfSileSiesta attribute)
(sisl.io.siesta.gridncSileSiesta attribute)
(sisl.io.siesta.hsxSileSiesta attribute)
(sisl.io.siesta.ncSileSiesta attribute)
(sisl.io.siesta.onlysSileSiesta attribute)
(sisl.io.siesta.outSileSiesta attribute)
(sisl.io.siesta.pdosSileSiesta attribute)
(sisl.io.siesta.structSileSiesta attribute)
(sisl.io.siesta.tsgfSileSiesta attribute)
(sisl.io.siesta.tshsSileSiesta attribute)
(sisl.io.siesta.tsvncSileSiesta attribute)
(sisl.io.siesta.xvSileSiesta attribute)
(sisl.io.tbtrans.deltancSileTBtrans attribute)
(sisl.io.tbtrans.phtavncSilePHtrans attribute)
(sisl.io.tbtrans.phtncSilePHtrans attribute)
(sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.phtsencSilePHtrans attribute)
(sisl.io.tbtrans.tbtavncSileTBtrans attribute)
(sisl.io.tbtrans.tbtgfSileTBtrans attribute)
(sisl.io.tbtrans.tbtncSileTBtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
(sisl.io.tbtrans.tbtsencSileTBtrans attribute)
(sisl.io.vasp.carSileVASP attribute)
(sisl.io.vasp.chgSileVASP attribute)
(sisl.io.vasp.locpotSileVASP attribute)
(sisl.io.wannier90.winSileWannier90 attribute)
(sisl.io.xsfSile attribute)
(sisl.io.xyzSile attribute)
(sisl.physics.BandStructure attribute)
(sisl.physics.electron.EigenstateElectron attribute)
(sisl.physics.Hamiltonian attribute)
plot_name() (sisl.viz.Animation class method)
(sisl.viz.MultiplePlot class method)
(sisl.viz.Plot class method)
(sisl.viz.SubPlots class method)
POLARIZED (sisl.physics.Spin attribute)
pop() (sisl.oplist.oplist method)
(sisl.utils.PropertyDict method)
popitem() (sisl.utils.PropertyDict method)
prepend() (sisl.Atoms method)
(sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseOrbital method)
(sisl.SuperCell method)
print() (sisl.io.siesta.fdfSileSiesta static method)
projections() (sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
PropertyDict (class in sisl.utils)
psi() (sisl.AtomicOrbital method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.Orbital method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
psi_spher() (sisl.AtomicOrbital method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
ptr (sisl.SparseCSR attribute)
,
[1]
PulayMixer (class in sisl.mixing)
pyamg_boundary_condition() (sisl.Grid method)
pyamg_fix() (sisl.Grid method)
pyamg_index() (sisl.Grid method)
pyamg_source() (sisl.Grid class method)
Q
q (in module sisl.constant)
q0 (sisl.AtomicOrbital property)
(sisl.Atoms property)
(sisl.Geometry property)
(sisl.GTOrbital property)
(sisl.HydrogenicOrbital property)
(sisl.Orbital property)
(sisl.SphericalOrbital property)
(sisl.STOrbital property)
Quaternion (class in sisl)
R
R (sisl.AtomicOrbital property)
(sisl.GTOrbital property)
(sisl.HydrogenicOrbital property)
(sisl.Orbital property)
(sisl.SphericalOrbital property)
(sisl.STOrbital property)
radial() (sisl.AtomicOrbital method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
radian (sisl.Quaternion property)
radii() (sisl.PeriodicTable method)
radius (sisl.shape.Ellipsoid property)
(sisl.shape.Sphere property)
radius() (sisl.Atom method)
(sisl.PeriodicTable method)
rcell (sisl.Geometry property)
(sisl.Grid property)
(sisl.physics.BandStructure property)
(sisl.physics.BrillouinZone property)
(sisl.physics.MonkhorstPack property)
(sisl.SuperCell property)
read() (sisl.Geometry static method)
(sisl.Grid static method)
(sisl.io.axsfSile method)
(sisl.io.BaseSile method)
(sisl.io.bigdft.asciiSileBigDFT method)
(sisl.io.bigdft.SileBigDFT method)
(sisl.io.bigdft.SileBinBigDFT method)
(sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.fhiaims.SileBinFHIaims method)
(sisl.io.fhiaims.SileFHIaims method)
(sisl.io.gulp.fcSileGULP method)
(sisl.io.gulp.gotSileGULP method)
(sisl.io.gulp.SileBinGULP method)
(sisl.io.gulp.SileGULP method)
(sisl.io.moldenSile method)
(sisl.io.openmx.omxSileOpenMX method)
(sisl.io.openmx.SileBinOpenMX method)
(sisl.io.openmx.SileCDFOpenMX method)
(sisl.io.openmx.SileOpenMX method)
(sisl.io.orca.outputSileORCA method)
(sisl.io.orca.SileBinORCA method)
(sisl.io.orca.SileORCA method)
(sisl.io.orca.txtSileORCA method)
(sisl.io.pdbSile method)
(sisl.io.scaleup.orboccSileScaleUp method)
(sisl.io.scaleup.refSileScaleUp method)
(sisl.io.scaleup.rhamSileScaleUp method)
(sisl.io.scaleup.SileBinScaleUp method)
(sisl.io.scaleup.SileScaleUp method)
(sisl.io.siesta.bandsSileSiesta method)
(sisl.io.siesta.dmSileSiesta method)
(sisl.io.siesta.eigSileSiesta method)
(sisl.io.siesta.faSileSiesta method)
(sisl.io.siesta.fcSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.gridSileSiesta method)
(sisl.io.siesta.hsxSileSiesta method)
(sisl.io.siesta.ionncSileSiesta method)
(sisl.io.siesta.ionxmlSileSiesta method)
(sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.onlysSileSiesta method)
(sisl.io.siesta.orbindxSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.siesta.pdosSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
(sisl.io.siesta.SileBinSiesta method)
(sisl.io.siesta.SileCDFSiesta method)
(sisl.io.siesta.SileSiesta method)
(sisl.io.siesta.structSileSiesta method)
(sisl.io.siesta.tsdeSileSiesta method)
(sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.siesta.wfsxSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.Sile method)
(sisl.io.SileBin method)
(sisl.io.SileCDF method)
(sisl.io.tableSile method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.SileBinTBtrans method)
(sisl.io.tbtrans.SileCDFTBtrans method)
(sisl.io.tbtrans.SileTBtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.io.vasp.carSileVASP method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.doscarSileVASP method)
(sisl.io.vasp.eigenvalSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
(sisl.io.vasp.outSileVASP method)
(sisl.io.vasp.SileBinVASP method)
(sisl.io.vasp.SileVASP method)
(sisl.io.wannier90.SileBinWannier90 method)
(sisl.io.wannier90.SileWannier90 method)
(sisl.io.wannier90.winSileWannier90 method)
(sisl.io.xsfSile method)
(sisl.io.xyzSile method)
(sisl.physics.DensityMatrix static method)
(sisl.physics.DynamicalMatrix static method)
(sisl.physics.EnergyDensityMatrix static method)
(sisl.physics.Hamiltonian static method)
(sisl.physics.Overlap static method)
(sisl.SuperCell static method)
read_atom() (sisl.io.scaleup.orboccSileScaleUp method)
read_basis() (sisl.io.openmx.omxSileOpenMX method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.ionncSileSiesta method)
(sisl.io.siesta.ionxmlSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.orbindxSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.siesta.wfsxSileSiesta method)
read_brillouinzone() (sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
(sisl.io.siesta.wfsxSileSiesta method)
read_charge() (sisl.io.orca.outputSileORCA method)
(sisl.io.siesta.outSileSiesta method)
read_data() (sisl.io.siesta.bandsSileSiesta method)
(sisl.io.siesta.eigSileSiesta method)
(sisl.io.siesta.faSileSiesta method)
(sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.siesta.pdosSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.tableSile method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.vasp.doscarSileVASP method)
(sisl.io.vasp.eigenvalSileVASP method)
(sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
read_data_methods (sisl.viz.Animation property)
(sisl.viz.MultiplePlot property)
(sisl.viz.Plot property)
(sisl.viz.SubPlots property)
read_delta() (sisl.io.tbtrans.deltancSileTBtrans method)
read_density_matrix() (sisl.io.siesta.dmSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.tsdeSileSiesta method)
read_dynamical_matrix() (sisl.io.gulp.gotSileGULP method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
read_eigenstate() (sisl.io.siesta.wfsxSileSiesta method)
read_electrons() (sisl.io.orca.outputSileORCA method)
(sisl.io.orca.txtSileORCA method)
read_energy() (sisl.io.orca.outputSileORCA method)
(sisl.io.orca.txtSileORCA method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.vasp.outSileVASP method)
read_energy_density_matrix() (sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.tsdeSileSiesta method)
read_fermi_level() (sisl.io.siesta.bandsSileSiesta method)
(sisl.io.siesta.eigSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.hsxSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.onlysSileSiesta method)
(sisl.io.siesta.pdosSileSiesta method)
(sisl.io.siesta.tsdeSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.vasp.doscarSileVASP method)
read_force() (sisl.io.siesta.faSileSiesta method)
(sisl.io.siesta.fcSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
read_force_constant() (sisl.io.gulp.fcSileGULP method)
(sisl.io.siesta.fcSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
read_geometry() (sisl.io.axsfSile method)
(sisl.io.bigdft.asciiSileBigDFT method)
(sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.gulp.gotSileGULP method)
(sisl.io.openmx.omxSileOpenMX method)
(sisl.io.orca.txtSileORCA method)
(sisl.io.pdbSile method)
(sisl.io.scaleup.refSileScaleUp method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.hsxSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.onlysSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.siesta.pdosSileSiesta method)
(sisl.io.siesta.structSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.io.vasp.carSileVASP method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
(sisl.io.wannier90.winSileWannier90 method)
(sisl.io.xsfSile method)
(sisl.io.xyzSile method)
read_grid() (sisl.io.cubeSile method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.gridSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
read_grid_size() (sisl.io.siesta.gridSileSiesta method)
read_hamiltonian() (sisl.io.scaleup.rhamSileScaleUp method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.hsxSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
(sisl.io.wannier90.winSileWannier90 method)
read_header() (sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
read_info() (sisl.io.siesta.wfsxSileSiesta method)
read_moment() (sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.siesta.outSileSiesta method)
read_orbital_energies() (sisl.io.orca.outputSileORCA method)
read_overlap() (sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.hsxSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.onlysSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
read_scf() (sisl.io.siesta.outSileSiesta method)
read_self_energy() (sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
read_sizes() (sisl.io.siesta.wfsxSileSiesta method)
read_stress() (sisl.io.siesta.outSileSiesta method)
read_super() (sisl.io.gulp.gotSileGULP method)
read_supercell() (sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.gulp.gotSileGULP method)
(sisl.io.openmx.omxSileOpenMX method)
(sisl.io.pdbSile method)
(sisl.io.scaleup.refSileScaleUp method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.gridSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.onlysSileSiesta method)
(sisl.io.siesta.structSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.io.vasp.carSileVASP method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
(sisl.io.wannier90.winSileWannier90 method)
read_supercell_nsc() (sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.orbindxSileSiesta method)
read_velocity() (sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.siesta.xvSileSiesta method)
real (sisl.constant.PhysicalConstant attribute)
real_space_coupling() (sisl.physics.RealSpaceSE method)
(sisl.physics.RealSpaceSI method)
real_space_parent() (sisl.physics.RealSpaceSE method)
(sisl.physics.RealSpaceSI method)
RealSpaceSE (class in sisl.physics)
RealSpaceSI (class in sisl.physics)
RecursiveSI (class in sisl.physics)
reduce() (sisl.Atoms method)
(sisl.Geometry method)
reflection() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
refSileScaleUp (class in sisl.io.scaleup)
remove() (sisl.Atom method)
(sisl.Atoms method)
(sisl.Geometry method)
(sisl.Grid method)
(sisl.oplist.oplist method)
(sisl.physics.Coefficient method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.electron.CoefficientElectron method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvalueElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.phonon.CoefficientPhonon method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvaluePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.physics.State method)
(sisl.physics.StateC method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
remove_orbital() (sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseOrbital method)
remove_part() (sisl.Grid method)
remove_shortcut() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
reorder() (sisl.Atoms method)
(sisl.Geometry method)
repeat() (sisl.Atoms method)
(sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
(sisl.SuperCell method)
replace() (sisl.Atoms method)
(sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.MonkhorstPack method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseOrbital method)
replace_atom() (sisl.Atoms method)
reset() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
reverse() (sisl.Atoms method)
(sisl.Geometry method)
(sisl.oplist.oplist method)
rhamSileScaleUp (class in sisl.io.scaleup)
Rij() (sisl.Geometry method)
rij() (sisl.Geometry method)
Rij() (sisl.physics.DensityMatrix method)
rij() (sisl.physics.DensityMatrix method)
Rij() (sisl.physics.DynamicalMatrix method)
rij() (sisl.physics.DynamicalMatrix method)
Rij() (sisl.physics.EnergyDensityMatrix method)
rij() (sisl.physics.EnergyDensityMatrix method)
Rij() (sisl.physics.Hamiltonian method)
rij() (sisl.physics.Hamiltonian method)
Rij() (sisl.physics.Overlap method)
rij() (sisl.physics.Overlap method)
Rij() (sisl.physics.SparseOrbitalBZ method)
rij() (sisl.physics.SparseOrbitalBZ method)
Rij() (sisl.physics.SparseOrbitalBZSpin method)
rij() (sisl.physics.SparseOrbitalBZSpin method)
Rij() (sisl.SparseAtom method)
rij() (sisl.SparseAtom method)
Rij() (sisl.SparseOrbital method)
rij() (sisl.SparseOrbital method)
rkpSileSiesta (class in sisl.io.siesta)
rocksalt() (in module sisl.geom)
rocksalt_slab() (in module sisl.geom)
rotate() (sisl.Geometry method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
(sisl.Quaternion method)
(sisl.SuperCell method)
rotate_miller() (sisl.Geometry method)
S
S (sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
save() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
sc() (in module sisl.geom)
sc2uc() (sisl.Geometry method)
sc_index() (sisl.Geometry method)
(sisl.Grid method)
(sisl.SuperCell method)
sc_off (sisl.Geometry property)
(sisl.Grid property)
(sisl.SuperCell property)
scale() (sisl.Atom method)
(sisl.AtomicOrbital method)
(sisl.Atoms method)
(sisl.Geometry method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.Orbital method)
(sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.NullShape method)
(sisl.shape.Shape method)
(sisl.shape.Sphere method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
(sisl.SuperCell method)
scale_columns() (sisl.SparseCSR method)
scattering_matrix() (sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.physics.RealSpaceSE method)
(sisl.physics.RealSpaceSI method)
(sisl.physics.RecursiveSI method)
(sisl.physics.SelfEnergy method)
(sisl.physics.SemiInfinite method)
(sisl.physics.WideBandSE method)
se2scat() (sisl.physics.RealSpaceSE static method)
(sisl.physics.RealSpaceSI static method)
(sisl.physics.RecursiveSI static method)
(sisl.physics.SelfEnergy static method)
(sisl.physics.SemiInfinite static method)
(sisl.physics.WideBandSE static method)
self_energy() (sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.physics.RealSpaceSE method)
(sisl.physics.RealSpaceSI method)
(sisl.physics.RecursiveSI method)
(sisl.physics.SelfEnergy method)
(sisl.physics.SemiInfinite method)
(sisl.physics.WideBandSE method)
self_energy_average() (sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
self_energy_lr() (sisl.physics.RecursiveSI method)
SelfEnergy (class in sisl.physics)
SemiInfinite (class in sisl.physics)
set() (sisl.io.siesta.fdfSileSiesta method)
set_bc() (sisl.Grid method)
set_boundary() (sisl.Grid method)
set_boundary_condition() (sisl.Grid method)
set_children() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.SubPlots method)
set_data() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
set_data_methods (sisl.viz.Animation property)
(sisl.viz.MultiplePlot property)
(sisl.viz.Plot property)
(sisl.viz.SubPlots property)
set_dyn_key() (sisl.io.gulp.gotSileGULP method)
set_dynamical_matrix_key() (sisl.io.gulp.gotSileGULP method)
set_geometry() (sisl.Grid method)
set_geometry_key() (sisl.io.gulp.gotSileGULP method)
set_grid() (sisl.Grid method)
set_history() (sisl.mixing.AdaptiveDIISMixer method)
(sisl.mixing.AdaptivePulayMixer method)
(sisl.mixing.BaseHistoryMixer method)
(sisl.mixing.DIISMixer method)
(sisl.mixing.PulayMixer method)
set_key() (sisl.io.gulp.gotSileGULP method)
set_nsc() (sisl.Geometry method)
(sisl.Grid method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
(sisl.SuperCell method)
set_options() (sisl.physics.RealSpaceSE method)
(sisl.physics.RealSpaceSI method)
set_parent() (sisl.physics.BandStructure method)
(sisl.physics.BrillouinZone method)
(sisl.physics.MonkhorstPack method)
set_radial() (sisl.AtomicOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.SphericalOrbital method)
set_sc() (sisl.Geometry method)
(sisl.Grid method)
set_shared_attr() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.SubPlots method)
set_supercell() (sisl.Geometry method)
(sisl.Grid method)
set_supercell_key() (sisl.io.gulp.gotSileGULP method)
set_weight() (sisl.mixing.AdaptiveDIISMixer method)
(sisl.mixing.AdaptivePulayMixer method)
(sisl.mixing.BaseHistoryMixer method)
(sisl.mixing.BaseMixer method)
(sisl.mixing.DIISMixer method)
(sisl.mixing.LinearMixer method)
(sisl.mixing.PulayMixer method)
setdefault() (sisl.utils.PropertyDict method)
settings (sisl.viz.Animation property)
(sisl.viz.MultiplePlot property)
(sisl.viz.Plot attribute)
(sisl.viz.Plot property)
(sisl.viz.SubPlots property)
setup_hamiltonian() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
Shape (class in sisl.shape)
shape (sisl.Grid property)
(sisl.physics.Coefficient property)
(sisl.physics.DensityMatrix property)
(sisl.physics.DynamicalMatrix property)
(sisl.physics.electron.CoefficientElectron property)
(sisl.physics.electron.EigenstateElectron property)
(sisl.physics.electron.EigenvalueElectron property)
(sisl.physics.electron.EigenvectorElectron property)
(sisl.physics.electron.StateCElectron property)
(sisl.physics.electron.StateElectron property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.Overlap property)
(sisl.physics.phonon.CoefficientPhonon property)
(sisl.physics.phonon.EigenmodePhonon property)
(sisl.physics.phonon.EigenvaluePhonon property)
(sisl.physics.phonon.EigenvectorPhonon property)
(sisl.physics.phonon.ModeCPhonon property)
(sisl.physics.phonon.ModePhonon property)
(sisl.physics.SparseOrbitalBZ property)
(sisl.physics.SparseOrbitalBZSpin property)
(sisl.physics.State property)
(sisl.physics.StateC property)
(sisl.SparseAtom property)
(sisl.SparseCSR property)
(sisl.SparseOrbital property)
shared_attr() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.SubPlots method)
shift() (sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
shortcut() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
shortcuts_for_json (sisl.viz.Animation property)
(sisl.viz.MultiplePlot property)
(sisl.viz.Plot property)
(sisl.viz.SubPlots property)
shortcuts_summary() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
shot_noise (sisl.io.tbtrans.phtavncSilePHtrans attribute)
(sisl.io.tbtrans.phtncSilePHtrans attribute)
(sisl.io.tbtrans.phtprojncSilePHtrans attribute)
(sisl.io.tbtrans.tbtavncSileTBtrans attribute)
(sisl.io.tbtrans.tbtprojncSileTBtrans attribute)
shot_noise() (sisl.io.tbtrans.tbtncSileTBtrans method)
show() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
Sile (class in sisl.io)
SileBigDFT (class in sisl.io.bigdft)
SileBin (class in sisl.io)
SileBinBigDFT (class in sisl.io.bigdft)
SileBinFHIaims (class in sisl.io.fhiaims)
SileBinGULP (class in sisl.io.gulp)
SileBinOpenMX (class in sisl.io.openmx)
SileBinORCA (class in sisl.io.orca)
SileBinScaleUp (class in sisl.io.scaleup)
SileBinSiesta (class in sisl.io.siesta)
SileBinTBtrans (class in sisl.io.tbtrans)
SileBinVASP (class in sisl.io.vasp)
SileBinWannier90 (class in sisl.io.wannier90)
SileCDF (class in sisl.io)
SileCDFOpenMX (class in sisl.io.openmx)
SileCDFSiesta (class in sisl.io.siesta)
SileCDFTBtrans (class in sisl.io.tbtrans)
SileError
SileFHIaims (class in sisl.io.fhiaims)
SileGULP (class in sisl.io.gulp)
SileInfo
SileOpenMX (class in sisl.io.openmx)
SileORCA (class in sisl.io.orca)
SileScaleUp (class in sisl.io.scaleup)
SileSiesta (class in sisl.io.siesta)
SileTBtrans (class in sisl.io.tbtrans)
SileVASP (class in sisl.io.vasp)
SileWannier90 (class in sisl.io.wannier90)
SileWarning
sisl
module
sisl.constant
module
sisl.geom
module
sisl.io
module
sisl.io.bigdft
module
sisl.io.fhiaims
module
sisl.io.gulp
module
sisl.io.openmx
module
sisl.io.orca
module
sisl.io.scaleup
module
sisl.io.siesta
module
sisl.io.tbtrans
module
sisl.io.vasp
module
sisl.io.wannier90
module
sisl.mixing
module
sisl.physics
module
sisl.physics.electron
module
sisl.physics.phonon
module
sisl.shape
module
sisl.unit
module
sisl.unit.siesta
module
sisl.utils
module
size (sisl.Grid property)
(sisl.physics.Spin property)
Sk() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
smooth() (sisl.Grid method)
solve_lagrange() (sisl.mixing.AdaptiveDIISMixer method)
(sisl.mixing.AdaptivePulayMixer method)
(sisl.mixing.DIISMixer method)
(sisl.mixing.PulayMixer method)
sort() (sisl.Geometry method)
(sisl.oplist.oplist method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.StateC method)
spalign() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
sparse-matrix
sparse_atom_to_vector() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
sparse_orbital_to_atom() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
sparse_orbital_to_scalar() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
sparse_orbital_to_vector() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
SparseAtom (class in sisl)
SparseCSR (class in sisl)
SparseOrbital (class in sisl)
SparseOrbitalBZ (class in sisl.physics)
SparseOrbitalBZSpin (class in sisl.physics)
sparserij() (sisl.Geometry method)
sparsity_union() (sisl.SparseCSR class method)
specie (sisl.Atoms property)
specie_index() (sisl.Atoms method)
spher() (sisl.AtomicOrbital method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
Sphere (class in sisl.shape)
SphericalOrbital (class in sisl)
Spin (class in sisl.physics)
spin (sisl.physics.DensityMatrix property)
(sisl.physics.EnergyDensityMatrix property)
(sisl.physics.Hamiltonian property)
(sisl.physics.SparseOrbitalBZSpin property)
spin_align() (sisl.physics.DensityMatrix method)
(sisl.physics.EnergyDensityMatrix method)
spin_moment() (in module sisl.physics.electron)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
spin_rotate() (sisl.physics.DensityMatrix method)
(sisl.physics.EnergyDensityMatrix method)
spin_squared() (in module sisl.physics.electron)
spinor (sisl.physics.Spin property)
SPINORBIT (sisl.physics.Spin attribute)
spsame() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
State (class in sisl.physics)
state (sisl.physics.electron.EigenstateElectron attribute)
(sisl.physics.electron.EigenvectorElectron attribute)
(sisl.physics.electron.StateCElectron attribute)
(sisl.physics.electron.StateElectron attribute)
(sisl.physics.phonon.EigenmodePhonon attribute)
(sisl.physics.phonon.EigenvectorPhonon attribute)
(sisl.physics.phonon.ModeCPhonon attribute)
(sisl.physics.phonon.ModePhonon attribute)
(sisl.physics.State attribute)
,
[1]
(sisl.physics.StateC attribute)
,
[1]
StateC (class in sisl.physics)
StateCElectron (class in sisl.physics.electron)
StateElectron (class in sisl.physics.electron)
step_function() (in module sisl.physics)
stop_listening() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
STOrbital (class in sisl)
str_spec() (in module sisl.utils)
strerror (sisl.io.SileError attribute)
strmap() (in module sisl.utils)
strseq() (in module sisl.utils)
structSileSiesta (class in sisl.io.siesta)
sub() (sisl.Atom method)
(sisl.Atoms method)
(sisl.Geometry method)
(sisl.Grid method)
(sisl.physics.Coefficient method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.electron.CoefficientElectron method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvalueElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.phonon.CoefficientPhonon method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvaluePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.physics.State method)
(sisl.physics.StateC method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
sub_orbital() (sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseOrbital method)
sub_part() (sisl.Grid method)
SubPlots (class in sisl.viz)
subplots() (sisl.viz.Animation class method)
(sisl.viz.MultiplePlot class method)
(sisl.viz.Plot class method)
(sisl.viz.SubPlots class method)
suffix() (sisl.viz.Animation class method)
(sisl.viz.MultiplePlot class method)
(sisl.viz.Plot class method)
(sisl.viz.SubPlots class method)
sum() (sisl.Grid method)
supercell
SuperCell (class in sisl)
swap() (sisl.Atoms method)
(sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
swap_atom() (sisl.Atoms method)
swapaxes() (sisl.Geometry method)
(sisl.Grid method)
(sisl.SuperCell method)
symbol (sisl.Atom property)
T
tableSile (class in sisl.io)
tag (sisl.Atom property)
(sisl.AtomicOrbital property)
(sisl.GTOrbital property)
(sisl.HydrogenicOrbital property)
(sisl.Orbital property)
(sisl.SphericalOrbital property)
(sisl.STOrbital property)
tbtavncSileTBtrans (class in sisl.io.tbtrans)
tbtgfSileTBtrans (class in sisl.io.tbtrans)
tbtncSileTBtrans (class in sisl.io.tbtrans)
tbtprojncSileTBtrans (class in sisl.io.tbtrans)
tbtsencSileTBtrans (class in sisl.io.tbtrans)
tile() (sisl.Atoms method)
(sisl.Geometry method)
(sisl.Grid method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.physics.State method)
(sisl.physics.StateC method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
(sisl.SuperCell method)
to (sisl.Geometry attribute)
(sisl.shape.Cube attribute)
(sisl.shape.Cuboid attribute)
(sisl.shape.Ellipsoid attribute)
(sisl.shape.NullShape attribute)
(sisl.shape.Shape attribute)
(sisl.shape.Sphere attribute)
to_json() (sisl.io.axsfSile method)
(sisl.io.BaseSile method)
(sisl.io.bigdft.asciiSileBigDFT method)
(sisl.io.bigdft.SileBigDFT method)
(sisl.io.bigdft.SileBinBigDFT method)
(sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.fhiaims.SileBinFHIaims method)
(sisl.io.fhiaims.SileFHIaims method)
(sisl.io.gulp.fcSileGULP method)
(sisl.io.gulp.gotSileGULP method)
(sisl.io.gulp.SileBinGULP method)
(sisl.io.gulp.SileGULP method)
(sisl.io.moldenSile method)
(sisl.io.openmx.omxSileOpenMX method)
(sisl.io.openmx.SileBinOpenMX method)
(sisl.io.openmx.SileCDFOpenMX method)
(sisl.io.openmx.SileOpenMX method)
(sisl.io.orca.outputSileORCA method)
(sisl.io.orca.SileBinORCA method)
(sisl.io.orca.SileORCA method)
(sisl.io.orca.txtSileORCA method)
(sisl.io.pdbSile method)
(sisl.io.scaleup.orboccSileScaleUp method)
(sisl.io.scaleup.refSileScaleUp method)
(sisl.io.scaleup.rhamSileScaleUp method)
(sisl.io.scaleup.SileBinScaleUp method)
(sisl.io.scaleup.SileScaleUp method)
(sisl.io.siesta.bandsSileSiesta method)
(sisl.io.siesta.dmSileSiesta method)
(sisl.io.siesta.eigSileSiesta method)
(sisl.io.siesta.faSileSiesta method)
(sisl.io.siesta.fcSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.gridSileSiesta method)
(sisl.io.siesta.hsxSileSiesta method)
(sisl.io.siesta.ionncSileSiesta method)
(sisl.io.siesta.ionxmlSileSiesta method)
(sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.onlysSileSiesta method)
(sisl.io.siesta.orbindxSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.siesta.pdosSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
(sisl.io.siesta.SileBinSiesta method)
(sisl.io.siesta.SileCDFSiesta method)
(sisl.io.siesta.SileSiesta method)
(sisl.io.siesta.structSileSiesta method)
(sisl.io.siesta.tsdeSileSiesta method)
(sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.siesta.wfsxSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.Sile method)
(sisl.io.SileBin method)
(sisl.io.SileCDF method)
(sisl.io.tableSile method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.SileBinTBtrans method)
(sisl.io.tbtrans.SileCDFTBtrans method)
(sisl.io.tbtrans.SileTBtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.io.vasp.carSileVASP method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.doscarSileVASP method)
(sisl.io.vasp.eigenvalSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
(sisl.io.vasp.outSileVASP method)
(sisl.io.vasp.SileBinVASP method)
(sisl.io.vasp.SileVASP method)
(sisl.io.wannier90.SileBinWannier90 method)
(sisl.io.wannier90.SileWannier90 method)
(sisl.io.wannier90.winSileWannier90 method)
(sisl.io.xsfSile method)
(sisl.io.xyzSile method)
toAtomicOrbital() (sisl.SphericalOrbital method)
tocartesian() (sisl.physics.BandStructure method)
(sisl.physics.BrillouinZone method)
(sisl.physics.MonkhorstPack method)
tocell() (sisl.SuperCell class method)
tocsr() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
toCuboid() (sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.NullShape method)
(sisl.shape.Shape method)
(sisl.shape.Sphere method)
(sisl.SuperCell method)
todense() (sisl.SparseCSR method)
toEllipsoid() (sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.NullShape method)
(sisl.shape.Shape method)
(sisl.shape.Sphere method)
toGrid() (sisl.AtomicOrbital method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.Orbital method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
tolinear() (sisl.physics.BandStructure method)
topyamg() (sisl.Grid method)
toreduced() (sisl.physics.BandStructure method)
(sisl.physics.BrillouinZone method)
(sisl.physics.MonkhorstPack method)
toSparseAtom() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseOrbital method)
toSphere() (sisl.Atom method)
(sisl.AtomicOrbital method)
(sisl.GTOrbital method)
(sisl.HydrogenicOrbital method)
(sisl.Orbital method)
(sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.NullShape method)
(sisl.shape.Shape method)
(sisl.shape.Sphere method)
(sisl.SphericalOrbital method)
(sisl.STOrbital method)
transform() (sisl.physics.DensityMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseCSR method)
translate() (sisl.Geometry method)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.EigenvectorPhonon method)
(sisl.physics.phonon.ModeCPhonon method)
(sisl.physics.phonon.ModePhonon method)
(sisl.physics.State method)
(sisl.physics.StateC method)
(sisl.SuperCell method)
translate2uc() (sisl.Geometry method)
translate_columns() (sisl.SparseCSR method)
transmission() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
transmission_bulk() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
transmission_eig() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
transpose() (sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseCSR method)
(sisl.SparseOrbital method)
trs() (sisl.physics.DensityMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.SparseOrbitalBZSpin method)
tsdeSileSiesta (class in sisl.io.siesta)
tsgfSileSiesta (class in sisl.io.siesta)
tshsSileSiesta (class in sisl.io.siesta)
tsvncSileSiesta (class in sisl.io.siesta)
txtSileORCA (class in sisl.io.orca)
type() (sisl.io.openmx.omxSileOpenMX method)
(sisl.io.siesta.fdfSileSiesta method)
U
uc2sc() (sisl.Geometry method)
undo_setting() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
undo_settings() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
undo_settings_group() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
unfold() (sisl.physics.Bloch method)
unfold_points() (sisl.physics.Bloch method)
unit (sisl.constant.PhysicalConstant property)
unit_convert() (in module sisl.unit)
unit_default() (in module sisl.unit)
unit_group() (in module sisl.unit)
units (in module sisl.unit)
UNPOLARIZED (sisl.physics.Spin attribute)
unrepeat() (sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
(sisl.SuperCell method)
untile() (sisl.Geometry method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.Overlap method)
(sisl.physics.SparseOrbitalBZ method)
(sisl.physics.SparseOrbitalBZSpin method)
(sisl.SparseAtom method)
(sisl.SparseOrbital method)
(sisl.SuperCell method)
update() (sisl.utils.PropertyDict method)
update_children_settings() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.SubPlots method)
update_settings() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
updates_available() (sisl.viz.Animation method)
(sisl.viz.MultiplePlot method)
(sisl.viz.Plot method)
(sisl.viz.SubPlots method)
V
values() (sisl.utils.PropertyDict method)
vector_current() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
vector_transmission() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
velocity() (sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.phonon.EigenmodePhonon method)
(sisl.physics.phonon.ModeCPhonon method)
version (sisl.io.siesta.hsxSileSiesta property)
(sisl.io.siesta.onlysSileSiesta property)
(sisl.io.siesta.tshsSileSiesta property)
vertices() (sisl.SuperCell method)
volume (sisl.Geometry property)
(sisl.Grid property)
(sisl.SuperCell property)
volume() (sisl.physics.BandStructure method)
(sisl.physics.BrillouinZone method)
(sisl.physics.MonkhorstPack method)
(sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.NullShape method)
(sisl.shape.Sphere method)
W
wavefunction() (in module sisl.physics.electron)
(sisl.physics.electron.EigenstateElectron method)
(sisl.physics.electron.EigenvectorElectron method)
(sisl.physics.electron.StateCElectron method)
(sisl.physics.electron.StateElectron method)
weight (sisl.mixing.AdaptiveDIISMixer property)
(sisl.mixing.AdaptivePulayMixer property)
(sisl.mixing.BaseHistoryMixer property)
(sisl.mixing.BaseMixer property)
(sisl.mixing.DIISMixer property)
(sisl.mixing.LinearMixer property)
(sisl.mixing.PulayMixer property)
(sisl.physics.BandStructure property)
(sisl.physics.BrillouinZone property)
(sisl.physics.MonkhorstPack property)
wfsxSileSiesta (class in sisl.io.siesta)
WideBandSE (class in sisl.physics)
winSileWannier90 (class in sisl.io.wannier90)
with_traceback() (sisl.io.SileError method)
(sisl.io.SileInfo method)
(sisl.io.SileWarning method)
within() (sisl.Geometry method)
(sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.NullShape method)
(sisl.shape.Shape method)
(sisl.shape.Sphere method)
within_index() (sisl.shape.Cube method)
(sisl.shape.Cuboid method)
(sisl.shape.Ellipsoid method)
(sisl.shape.NullShape method)
(sisl.shape.Shape method)
(sisl.shape.Sphere method)
within_inf() (sisl.Geometry method)
within_sc() (sisl.Geometry method)
wk (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
wkpt (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
write() (sisl.Geometry method)
(sisl.Grid method)
(sisl.io.axsfSile method)
(sisl.io.BaseSile method)
(sisl.io.bigdft.asciiSileBigDFT method)
(sisl.io.bigdft.SileBigDFT method)
(sisl.io.bigdft.SileBinBigDFT method)
(sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.fhiaims.SileBinFHIaims method)
(sisl.io.fhiaims.SileFHIaims method)
(sisl.io.gulp.fcSileGULP method)
(sisl.io.gulp.gotSileGULP method)
(sisl.io.gulp.SileBinGULP method)
(sisl.io.gulp.SileGULP method)
(sisl.io.moldenSile method)
(sisl.io.openmx.omxSileOpenMX method)
(sisl.io.openmx.SileBinOpenMX method)
(sisl.io.openmx.SileCDFOpenMX method)
(sisl.io.openmx.SileOpenMX method)
(sisl.io.orca.outputSileORCA method)
(sisl.io.orca.SileBinORCA method)
(sisl.io.orca.SileORCA method)
(sisl.io.orca.txtSileORCA method)
(sisl.io.pdbSile method)
(sisl.io.scaleup.orboccSileScaleUp method)
(sisl.io.scaleup.refSileScaleUp method)
(sisl.io.scaleup.rhamSileScaleUp method)
(sisl.io.scaleup.SileBinScaleUp method)
(sisl.io.scaleup.SileScaleUp method)
(sisl.io.siesta.bandsSileSiesta method)
(sisl.io.siesta.dmSileSiesta method)
(sisl.io.siesta.eigSileSiesta method)
(sisl.io.siesta.faSileSiesta method)
(sisl.io.siesta.fcSileSiesta method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.gridSileSiesta method)
(sisl.io.siesta.hsxSileSiesta method)
(sisl.io.siesta.ionncSileSiesta method)
(sisl.io.siesta.ionxmlSileSiesta method)
(sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.onlysSileSiesta method)
(sisl.io.siesta.orbindxSileSiesta method)
(sisl.io.siesta.outSileSiesta method)
(sisl.io.siesta.pdosSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
(sisl.io.siesta.SileBinSiesta method)
(sisl.io.siesta.SileCDFSiesta method)
(sisl.io.siesta.SileSiesta method)
(sisl.io.siesta.structSileSiesta method)
(sisl.io.siesta.tsdeSileSiesta method)
(sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.siesta.wfsxSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.Sile method)
(sisl.io.SileBin method)
(sisl.io.SileCDF method)
(sisl.io.tableSile method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.phtsencSilePHtrans method)
(sisl.io.tbtrans.SileBinTBtrans method)
(sisl.io.tbtrans.SileCDFTBtrans method)
(sisl.io.tbtrans.SileTBtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
(sisl.io.tbtrans.tbtsencSileTBtrans method)
(sisl.io.vasp.carSileVASP method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.doscarSileVASP method)
(sisl.io.vasp.eigenvalSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
(sisl.io.vasp.outSileVASP method)
(sisl.io.vasp.SileBinVASP method)
(sisl.io.vasp.SileVASP method)
(sisl.io.wannier90.SileBinWannier90 method)
(sisl.io.wannier90.SileWannier90 method)
(sisl.io.wannier90.winSileWannier90 method)
(sisl.io.xsfSile method)
(sisl.io.xyzSile method)
(sisl.physics.BandStructure method)
(sisl.physics.BrillouinZone method)
(sisl.physics.DensityMatrix method)
(sisl.physics.DynamicalMatrix method)
(sisl.physics.EnergyDensityMatrix method)
(sisl.physics.Hamiltonian method)
(sisl.physics.MonkhorstPack method)
(sisl.physics.Overlap method)
write_basis() (sisl.io.siesta.ncSileSiesta method)
write_brillouinzone() (sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
write_data() (sisl.io.siesta.faSileSiesta method)
(sisl.io.siesta.kpSileSiesta method)
(sisl.io.siesta.rkpSileSiesta method)
(sisl.io.tableSile method)
write_delta() (sisl.io.tbtrans.deltancSileTBtrans method)
write_density_matrices() (sisl.io.siesta.tsdeSileSiesta method)
write_density_matrix() (sisl.io.siesta.dmSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.tsdeSileSiesta method)
write_dynamical_matrix() (sisl.io.siesta.ncSileSiesta method)
write_energy_density_matrix() (sisl.io.siesta.ncSileSiesta method)
write_force() (sisl.io.siesta.faSileSiesta method)
write_geometry() (sisl.io.axsfSile method)
(sisl.io.bigdft.asciiSileBigDFT method)
(sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.moldenSile method)
(sisl.io.pdbSile method)
(sisl.io.scaleup.refSileScaleUp method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.structSileSiesta method)
(sisl.io.siesta.xvSileSiesta method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.vasp.carSileVASP method)
(sisl.io.vasp.chgSileVASP method)
(sisl.io.vasp.locpotSileVASP method)
(sisl.io.wannier90.winSileWannier90 method)
(sisl.io.xsfSile method)
(sisl.io.xyzSile method)
write_grid (sisl.io.axsfSile attribute)
write_grid() (sisl.io.cubeSile method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.xsfSile method)
write_hamiltonian() (sisl.io.siesta.ncSileSiesta method)
(sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.siesta.tshsSileSiesta method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
write_header() (sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
write_overlap() (sisl.io.siesta.ncSileSiesta method)
write_self_energy() (sisl.io.siesta.tsgfSileSiesta method)
(sisl.io.tbtrans.tbtgfSileTBtrans method)
write_supercell() (sisl.io.axsfSile method)
(sisl.io.cubeSile method)
(sisl.io.fhiaims.inSileFHIaims method)
(sisl.io.moldenSile method)
(sisl.io.pdbSile method)
(sisl.io.siesta.fdfSileSiesta method)
(sisl.io.siesta.gridncSileSiesta method)
(sisl.io.siesta.tsvncSileSiesta method)
(sisl.io.tbtrans.deltancSileTBtrans method)
(sisl.io.wannier90.winSileWannier90 method)
(sisl.io.xsfSile method)
write_tbtav() (sisl.io.tbtrans.phtavncSilePHtrans method)
(sisl.io.tbtrans.phtncSilePHtrans method)
(sisl.io.tbtrans.phtprojncSilePHtrans method)
(sisl.io.tbtrans.tbtavncSileTBtrans method)
(sisl.io.tbtrans.tbtncSileTBtrans method)
(sisl.io.tbtrans.tbtprojncSileTBtrans method)
X
X (sisl.physics.Spin attribute)
xa (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
xsfSile (class in sisl.io)
xvSileSiesta (class in sisl.io.siesta)
xyz (sisl.io.tbtrans.phtavncSilePHtrans property)
(sisl.io.tbtrans.phtncSilePHtrans property)
(sisl.io.tbtrans.phtprojncSilePHtrans property)
(sisl.io.tbtrans.phtsencSilePHtrans property)
(sisl.io.tbtrans.tbtavncSileTBtrans property)
(sisl.io.tbtrans.tbtncSileTBtrans property)
(sisl.io.tbtrans.tbtprojncSileTBtrans property)
(sisl.io.tbtrans.tbtsencSileTBtrans property)
xyzSile (class in sisl.io)
Y
Y (sisl.physics.Spin attribute)
yield_eigenstate() (sisl.io.siesta.wfsxSileSiesta method)
Z
Z (sisl.Atom property)
(sisl.Atoms property)
(sisl.physics.Spin attribute)
Z() (sisl.PeriodicTable method)
Z_int() (sisl.PeriodicTable method)
Z_label() (sisl.PeriodicTable method)
Z_short() (sisl.PeriodicTable method)
zeta (sisl.AtomicOrbital property)
(sisl.HydrogenicOrbital property)
zgnr() (in module sisl.geom)
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